| Insights into respiratory illness at the population level through parallel analysis of pharmaceutical and viral markers in wastewater
Baumgartner, S., Salvisberg, M., Schmidhalter, P., Julian, T. R., Ort, C., & Singer, H. (2025). Insights into respiratory illness at the population level through parallel analysis of pharmaceutical and viral markers in wastewater. Nature Water, 3, 580-589. https://doi.org/10.1038/s44221-025-00437-4 |
| Automation of on-site microbial water quality monitoring from source to tap: challenges and perspectives
Burnet, J. B., Demeter, K., Dorner, S., Farnleitner, A. H., Hammes, F., Pinto, A. J., … van Bel, N. (2025). Automation of on-site microbial water quality monitoring from source to tap: challenges and perspectives. Water Research, 274, 123121 (17 pp.). https://doi.org/10.1016/j.watres.2025.123121 |
| High-throughput multiplex detection of antibiotic-resistant genes and virulence factors in<em> Escherichia coli</em> using digital multiplex ligation assay
Conforti, S., Rossi Orts, P., Tamminen, M., & Julian, T. R. (2025). High-throughput multiplex detection of antibiotic-resistant genes and virulence factors in Escherichia coli using digital multiplex ligation assay. Journal of Molecular Diagnostics, 27(6), 511-524. https://doi.org/10.1016/j.jmoldx.2025.03.003 |
| Strengthening policy relevance of wastewater-based surveillance for antimicrobial resistance
Conforti, S., Pruden, A., Acosta, N., Anderson, C., Buergmann, H., Calabria De Araujo, J., … Harnisz, M. (2025). Strengthening policy relevance of wastewater-based surveillance for antimicrobial resistance. Environmental Science and Technology, 59(5), 2339-2343. https://doi.org/10.1021/acs.est.4c09663 |
| Permafrost thawing by soil transplantation alters the functional genetic potential of the alpine permafrost microbiome
Feng, M., Varliero, G., Perez-Mon, C., Robinson, S., Qi, W., Stierli, B., & Frey, B. (2025). Permafrost thawing by soil transplantation alters the functional genetic potential of the alpine permafrost microbiome. Geoderma, 458, 117339 (12 pp.). https://doi.org/10.1016/j.geoderma.2025.117339 |
| Retrospective wastewater tracking of measles outbreak in western Switzerland in winter 2024
Gan, C., Pitton, M., de Korne-Elenbaas, J., Cobuccio, L., Cassini, A., Ort, C., & Julian, T. R. (2025). Retrospective wastewater tracking of measles outbreak in western Switzerland in winter 2024. Environmental Science and Technology Letters, 12(6), 689-694. https://doi.org/10.1021/acs.estlett.5c00244 |
| Wastewater-based poliovirus surveillance using digital PCR
Gan, C., Pitton, M., de Korne, J., Gosert, R., Leuzinger, K., Kohn, T., … Julian, T. R. (2025). Wastewater-based poliovirus surveillance using digital PCR. Swiss Federal Institute of Aquatic Science and Technology, Eawag. https://doi.org/10.55408/eawag:34819 |
| Wastewater-based surveillance for measles, mumps and rubella in Switzerland
Gan, C., Pitton, M., de Korne, J., Ort, C., & Julian, T. R. (2025). Wastewater-based surveillance for measles, mumps and rubella in Switzerland. Swiss Federal Institute of Aquatic Science and Technology, Eawag. https://doi.org/10.55408/eawag:34821 |
| Foresight 2035: a perspective on the next decade of research on the management of <em>Legionella </em>spp. in engineered aquatic environments
Hammes, F., Gabrielli, M., Cavallaro, A., Eichelberg, A., Barigelli, S., Bigler, M., … Waak, M. (2025). Foresight 2035: a perspective on the next decade of research on the management of Legionella spp. in engineered aquatic environments. FEMS Microbiology Reviews, 49, fuaf022 (18 pp.). https://doi.org/10.1093/femsre/fuaf022 |
| Evaporation controls contact-dependent bacterial killing during surface-associated growth
Han, M., Ruan, C., Wang, G., & Johnson, D. R. (2025). Evaporation controls contact-dependent bacterial killing during surface-associated growth. ISME Communications, 5(1), ycaf034 (5 pp.). https://doi.org/10.1093/ismeco/ycaf034 |
| Applying side-stream gas recirculation to promote anaerobic digestion of food waste under ammonia stress: overlooked impact of gaseous atmospheres on microorganisms
He, L., Li, J., Tang, L., Wang, Y., Zhao, X., Ding, K., … Wei, Y. yuan. (2025). Applying side-stream gas recirculation to promote anaerobic digestion of food waste under ammonia stress: overlooked impact of gaseous atmospheres on microorganisms. Water Research, 281, 123571 (13 pp.). https://doi.org/10.1016/j.watres.2025.123571 |
| Disentangling the feedback loops driving spatial patterning in microbial communities
Henderson, A., Del Panta, A., Schubert, O. T., Mitri, S., & van Vliet, S. (2025). Disentangling the feedback loops driving spatial patterning in microbial communities. npj Biofilms and Microbiomes, 11, 32 (14 pp.). https://doi.org/10.1038/s41522-025-00666-1 |
| Surface-enhanced Raman spectroscopy (SERS) based biological and environmental 2D and 3D imaging
Huang, Q., Guo, H., Wang, W., Kang, S., & Vikesland, P. J. (2025). Surface-enhanced Raman spectroscopy (SERS) based biological and environmental 2D and 3D imaging. ACS Environmental Au. https://doi.org/10.1021/acsenvironau.4c00149 |
| Prophage induction and quorum sensing enhance biofilm stability and resistance under ammonia-oxidizing bacteria-mediated oxidative stress
Ju, X., Sun, H., Ruan, C., Wang, H., Shi, B., Alvarez, P. J. J., & Yu, P. (2025). Prophage induction and quorum sensing enhance biofilm stability and resistance under ammonia-oxidizing bacteria-mediated oxidative stress. Water Research, 284, 124010 (11 pp.). https://doi.org/10.1016/j.watres.2025.124010 |
| Differential effects of <em>Daphnia</em> genotype composition on spatial environmental heterogeneity in experimental metacommunities
Limberger, R., Spaak, J., Bürgmann, H., Spaak, P., & Matthews, B. (2025). Differential effects of Daphnia genotype composition on spatial environmental heterogeneity in experimental metacommunities. Limnology and Oceanography. https://doi.org/10.1002/lno.70043 |
| Bacterium-phage interactions enhance biofilm resilience during membrane filtration biofouling under oxidative and hydraulic stresses
Lin, Z., Ruan, C., Xia, R., Liao, J., Zhu, L., Wang, D., … Yu, P. (2025). Bacterium-phage interactions enhance biofilm resilience during membrane filtration biofouling under oxidative and hydraulic stresses. Environmental Science and Technology, 59(17), 8614-8628. https://doi.org/10.1021/acs.est.5c00490 |
| Keystone taxa mediate the trade-off between microbial community stability and performance in activated sludges
Liu, X., Wang, M., Liu, B., Chen, X., An, L., Nie, Y., & Wu, X. L. (2025). Keystone taxa mediate the trade-off between microbial community stability and performance in activated sludges. Nature Water. https://doi.org/10.1038/s44221-025-00451-6 |
| Machine learning reveals signatures of promiscuous microbial amidases for micropollutant biotransformations
Marti, T. D., Schweizer, D., Yu, Y., Schärer, M. R., Probst, S. I., & Robinson, S. L. (2025). Machine learning reveals signatures of promiscuous microbial amidases for micropollutant biotransformations. ACS Environmental Au, 5(1), 114-127. https://doi.org/10.1021/acsenvironau.4c00066 |
| The metabolome of <em>Sphingobium chinhatense</em> IP26 exposed to chlorinated paraffins – Efficient data analysis with RASER
Mathis, F., Iten, S., Knobloch, M., Fleischmann, T., Stalder, U., Bleiner, D., … Heeb, N. V. (2025). The metabolome of Sphingobium chinhatense IP26 exposed to chlorinated paraffins – Efficient data analysis with RASER. Chemosphere, 373, 144160 (12 pp.). https://doi.org/10.1016/j.chemosphere.2025.144160 |
| Unsupervised extraction of rotational Lagrangian coherent structures
Neamtu-Halic, M. M., Brizzolara, S., Haller, G., & Holzner, M. (2025). Unsupervised extraction of rotational Lagrangian coherent structures. Computers and Fluids, 290, 106558 (8 pp.). https://doi.org/10.1016/j.compfluid.2025.106558 |
