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Definitions and guidelines for research on antibiotic persistence
Balaban, N. Q., Helaine, S., Lewis, K., Ackermann, M., Aldridge, B., Andersson, D. I., … Zinkernagel, A. (2019). Definitions and guidelines for research on antibiotic persistence. Nature Reviews Microbiology, 17, 441-448. https://doi.org/10.1038/s41579-019-0196-3
Metagenomics and the development of viral water quality tools
Bibby, K., Crank, K., Greaves, J., Li, X., Wu, Z., Hamza, I. A., & Stachler, E. (2019). Metagenomics and the development of viral water quality tools. npj Clean Water, 2(1), 9 (13 pp.). https://doi.org/10.1038/s41545-019-0032-3
Health risks for sanitation service workers along a container-based urine collection system and resource recovery value chain
Bischel, H. N., Caduff, L., Schindelholz, S., Kohn, T., & Julian, T. R. (2019). Health risks for sanitation service workers along a container-based urine collection system and resource recovery value chain. Environmental Science and Technology, 7055-7067. https://doi.org/10.1021/acs.est.9b01092
Mutational and selective processes involved in evolution during cacterial range expansions
Bosshard, L., Peischl, S., Ackermann, M., & Excoffier, L. (2019). Mutational and selective processes involved in evolution during cacterial range expansions. Molecular Biology and Evolution, 36(10), 2313-2327. https://doi.org/10.1093/molbev/msz148
Functional microbial landscapes
Ciccarese, D., & Johnson, D. R. (2019). Functional microbial landscapes. In S. Agathos & B. Stenuit (Eds.), Comprehensive biotechnology: Vol. 6. Environmental and related biotechnologies (pp. 42-51). Elsevier.
Cyt‐Geist: current and future challenges in cytometry: reports of the CYTO 2018 conference workshops
Czechowska, K., Lannigan, J., Wang, L., Arcidiacono, J., Ashhurst, T. M., Barnard, R. M., … Tárnok, A. (2019). Cyt‐Geist: current and future challenges in cytometry: reports of the CYTO 2018 conference workshops. Cytometry Part A, 95(6), 598-644. https://doi.org/10.1002/cyto.a.23777
Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations
Dal Co, A., van Vliet, S., & Ackermann, M. (2019). Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1786), 20190080 (10 pp.). https://doi.org/10.1098/rstb.2019.0080
Metabolic activity affects the response of single cells to a nutrient switch in structured populations
Dal Co, A., Ackermann, M., & van Vliet, S. (2019). Metabolic activity affects the response of single cells to a nutrient switch in structured populations. Journal of the Royal Society Interface, 16(156), 20190182 (10 pp.). https://doi.org/10.1098/rsif.2019.0182
Photochemical transformation of poly(butylene adipate-<i>co</i>-terephthalate) and its effects on enzymatic hydrolyzability
De Hoe, G. X., Zumstein, M. T., Getzinger, G. J., Rüegsegger, I., Kohler, H. P. E., Maurer-Jones, M. A., … McNeill, K. (2019). Photochemical transformation of poly(butylene adipate-co-terephthalate) and its effects on enzymatic hydrolyzability. Environmental Science and Technology, 53(5), 2472-2481. https://doi.org/10.1021/acs.est.8b06458
In-host evolution of <i>Staphylococcus epidermidis</i> in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance
Dengler Haunreiter, V., Boumasmoud, M., Häffner, N., Wipfli, D., Leimer, N., Rachmühl, C., … Zinkernagel, A. S. (2019). In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications, 10(1), 1149 (14 pp.). https://doi.org/10.1038/s41467-019-09053-9
Evaluation of the novel substrate RUG<sup>™</sup> for the detection of<i>Escherichia coli</i> in water from temperate (Zurich, Switzerland) and tropical (Bushenyi, Uganda) field sites
Genter, F., Marks, S. J., Clair-Caliot, G., Mugume, D. S., Johnston, R. B., Bain, R. E. S., & Julian, T. R. (2019). Evaluation of the novel substrate RUG for the detection ofEscherichia coli in water from temperate (Zurich, Switzerland) and tropical (Bushenyi, Uganda) field sites. Environmental Science: Water Research and Technology. https://doi.org/10.1039/C9EW00138G
Mechanistic dose–response modelling of animal challenge data shows that intact skin is a crucial barrier to leptospiral infection
Gostic, K. M., Wunder, E. A., Bisht, V., Hamond, C., Julian, T. R., Ko, A. I., & Lloyd-Smith, J. O. (2019). Mechanistic dose–response modelling of animal challenge data shows that intact skin is a crucial barrier to leptospiral infection. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1782), 20190367 (10 pp.). https://doi.org/10.1098/rstb.2019.0367
Editorial Perspectives: using bacteria in rubber ducks to improve scientific literacy, advance citizen science, and expand fundamental science
Hammes, F. (2019). Editorial Perspectives: using bacteria in rubber ducks to improve scientific literacy, advance citizen science, and expand fundamental science. Environmental Science: Water Research and Technology, 5(3), 442-443. https://doi.org/10.1039/c9ew90008j
Biotransformation of short-chain chlorinated paraffins (SCCPs) with LinA2: a HCH and HBCD converting bacterial dehydrohalogenase
Heeb, N. V., Schalles, S., Lehner, S., Schinkel, L., Schilling, I., Lienemann, P., … Kohler, H. P. E. (2019). Biotransformation of short-chain chlorinated paraffins (SCCPs) with LinA2: a HCH and HBCD converting bacterial dehydrohalogenase. Chemosphere, 226, 744-754. https://doi.org/10.1016/j.chemosphere.2019.03.169
Fecal colonization with multidrug-resistant <i>E. coli</i> among healthy infants in rural Bangladesh
Islam, M. A., Amin, M. B., Roy, S., Asaduzzaman, M., Islam, M. R., Navab-Daneshmand, T., … Julian, T. R. (2019). Fecal colonization with multidrug-resistant E. coli among healthy infants in rural Bangladesh. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00640
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
Ju, F., Beck, K., Yin, X., Maccagnan, A., McArdell, C. S., Singer, H. P., … Bürgmann, H. (2019). Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. ISME Journal, 13(2), 346-360. https://doi.org/10.1038/s41396-018-0277-8
Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores
Leventhal, G. E., Ackermann, M., & Schiessl, K. T. (2019). Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores. Journal of the Royal Society Interface, 16(150), 20180674 (13 pp.). https://doi.org/10.1098/rsif.2018.0674
Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage
Lilja, E. E., & Johnson, D. R. (2019). Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage. BMC Evolutionary Biology, 19(1), 129 (11 pp.). https://doi.org/10.1186/s12862-019-1458-4
Modelling carbofuran biotransformation by: <i>Novosphingobium</i> sp. KN65.2 in the presence of coincidental carbon and indigenous microbes
Liu, L., Helbling, D. E., Kohler, H. P. E., & Smets, B. F. (2019). Modelling carbofuran biotransformation by: Novosphingobium sp. KN65.2 in the presence of coincidental carbon and indigenous microbes. Environmental Science: Water Research and Technology, 5(4), 798-807. https://doi.org/10.1039/c8ew00929e
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
Mansfeldt, C., Achermann, S., Men, Y., Walser, J. C., Villez, K., Joss, A., … Fenner, K. (2019). Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. ISME Journal, 13(6), 1589-1601. https://doi.org/10.1038/s41396-019-0371-6
 

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