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Population genetics of non-genetic traits: evolutionary roles of stochasticity in gene expression
Mineta, K., Matsumoto, T., Osada, N., & Araki, H. (2015). Population genetics of non-genetic traits: evolutionary roles of stochasticity in gene expression. Gene, 562(1), 16-21. https://doi.org/10.1016/j.gene.2015.03.011
Stocking of captive-bred fish can cause long-term population decline and gene pool replacement: predictions from a population dynamics model incorporating density-dependent mortality
Satake, A., & Araki, H. (2012). Stocking of captive-bred fish can cause long-term population decline and gene pool replacement: predictions from a population dynamics model incorporating density-dependent mortality. Theoretical Ecology, 5(2), 283-296. https://doi.org/10.1007/s12080-011-0128-y
Genome-wide survey of pseudogenes in 80 fully re-sequenced <I>Arabidopsis thaliana</I> accessions
Wang, L., Si, W., Yao, Y., Tian, D., Araki, H., & Yang, S. (2012). Genome-wide survey of pseudogenes in 80 fully re-sequenced Arabidopsis thaliana accessions. PLoS One, 7(12), e51769 (13 pp.). https://doi.org/10.1371/journal.pone.0051769
Spatial and temporal variation in population genetic structure of wild Nile tilapia (<I>Oreochromis niloticus</I>) across Africa
Bezault, E., Balaresque, P., Toguyeni, A., Fermon, Y., Araki, H., Baroiller, J. F., & Rognon, X. (2011). Spatial and temporal variation in population genetic structure of wild Nile tilapia (Oreochromis niloticus) across Africa. BMC Genetics, 12, 102 (16 pp.). https://doi.org/10.1186/1471-2156-12-102
Is hatchery stocking a help or harm? Evidence, limitations and future directions in ecological and genetic surveys
Araki, H., & Schmid, C. (2010). Is hatchery stocking a help or harm? Evidence, limitations and future directions in ecological and genetic surveys. Aquaculture, 308(Suppl. 1), S2-S11. https://doi.org/10.1016/j.aquaculture.2010.05.036
Avoidance of long mononucleotide repeats in codon pair usage
Gu, T., Tan, S., Gou, X., Araki, H., & Tian, D. (2010). Avoidance of long mononucleotide repeats in codon pair usage. Genetics, 186(3), 1077-1084. https://doi.org/10.1534/genetics.110.121137
Multilocus analysis of genetic divergence between outcrossing <I>Arabidopsis </I>species: evidence of genome-wide admixture
Wang, W. K., Ho, C. W., Hung, K. H., Wang, K. H., Huang, C. C., Araki, H., … Chiang, T. Y. (2010). Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture. New Phytologist, 188(2), 488-500. https://doi.org/10.1111/j.1469-8137.2010.03383.x
Genome-wide investigation reveals high evolutionary rates in annual model plants
Yue, J. X., Li, J., Wang, D., Araki, H., Tian, D., & Yang, S. (2010). Genome-wide investigation reveals high evolutionary rates in annual model plants. BMC Plant Biology, 10(242), 1-12. https://doi.org/10.1186/1471-2229-10-242
Genomewide association between insertions/deletions and the nucleotide diversity in bacteria
Zhu, L., Wang, Q., Tang, P., Araki, H., & Tian, D. (2009). Genomewide association between insertions/deletions and the nucleotide diversity in bacteria. Molecular Biology and Evolution, 26(10), 2353-2361. https://doi.org/10.1093/molbev/msp144
Fitness of hatchery-reared salmonids in the wild
Araki, H., Berejikian, B. A., Ford, M. J., & Blouin, M. S. (2008). Fitness of hatchery-reared salmonids in the wild. Evolutionary Applications, 1(2), 342-355. https://doi.org/10.1111/j.1752-4571.2008.00026.x
Grouped nucleotide polymorphism: a major contributor to genetic variation in <I>Arabidopsis</I>
Du, J., Gu, T., Tian, H., Araki, H., Yang, Y. H., & Tian, D. (2008). Grouped nucleotide polymorphism: a major contributor to genetic variation in Arabidopsis. Gene, 426(1–2), 1-6. https://doi.org/10.1016/j.gene.2008.09.003
Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
Tian, D., Wang, Q., Zhang, P., Araki, H., Yang, S., Kreitman, M., … Chen, J. Q. (2008). Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature, 455(7175), 105-108. https://doi.org/10.1038/nature07175
The pattern of insertion/deletion polymorphism in <I>Arabidopsis thaliana</I>
Zhang, W., Sun, X., Yuan, H., Araki, H., Wang, J., & Tian, D. (2008). The pattern of insertion/deletion polymorphism in Arabidopsis thaliana. Molecular Genetics and Genomics, 280(4), 351-361. https://doi.org/10.1007/s00438-008-0370-1