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Functional microbial landscapes
Ciccarese, D., & Johnson, D. R. (2019). Functional microbial landscapes. In S. Agathos & B. Stenuit (Eds.), Comprehensive biotechnology: Vol. 6. Environmental and related biotechnologies (pp. 42-51). https://doi.org/10.1016/B978-0-444-64046-8.00472-9
Generality of associations between biological richness and the rates of metabolic processes across microbial communities
Patsch, D., van Vliet, S., Garbani Marcantini, L., & Johnson, D. R. (2018). Generality of associations between biological richness and the rates of metabolic processes across microbial communities. Environmental Microbiology, 20(12), 4356-4368. https://doi.org/10.1111/1462-2920.14352
A conceptual framework for invasion in microbial communities
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., … Smets, B. F. (2016). A conceptual framework for invasion in microbial communities. ISME Journal, 10, 2773-2779. https://doi.org/10.1038/ismej.2016.75
Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates
Lilja, E. E., & Johnson, D. R. (2016). Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates. ISME Journal, 10, 1568-1578. https://doi.org/10.1038/ismej.2015.243
Global gene expression of <I>Dehalococcoides</I> within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply
West, K. A., Lee, P. K. H., Johnson, D. R., Zinder, S. H., & Alvarez-Cohen, L. (2013). Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply. Biotechnology and Bioengineering, 110(5), 1333-1341. https://doi.org/10.1002/bit.24819
Sustainable syntrophic growth of <I>Dehalococcoides ethenogenes</I> strain 195 with <I>Desulfovibrio vulgaris</I> Hildenborough and <I>Methanobacterium congolense</I>: global transcriptomic and proteomic analyses
Men, Y., Feil, H., Verberkmoes, N. C., Shah, M. B., Johnson, D. R., Lee, P. K. H., … Alvarez-Cohen, L. (2012). Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. ISME Journal, 6(2), 410-421. https://doi.org/10.1038/ismej.2011.111
Metabolic specialization and the assembly of microbial communities
Johnson, D. R., Goldschmidt, F., Lilja, E. E., & Ackermann, M. (2012). Metabolic specialization and the assembly of microbial communities. ISME Journal, 6(11), 1985-1991. https://doi.org/10.1038/ismej.2012.46