Active Filters

  • (-) Eawag Authors = Johnson, David R.
  • (-) Organizational Unit ≠ Process Engineering ENG
  • (-) Full Text = Open Access
  • (-) Eawag Authors ≠ Beck, Karin
Search Results 1 - 15 of 15
  • CSV Spreadsheet
  • Excel Spreadsheet
  • RSS Feed
Select Page
Interaction-dependent effects of surface structure on microbial spatial self-organization
Ciccarese, D., Zuidema, A., Merlo, V., & Johnson, D. R. (2020). Interaction-dependent effects of surface structure on microbial spatial self-organization. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1798), 20190246 (11 pp.). https://doi.org/10.1098/rstb.2019.0246
Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage
Lilja, E. E., & Johnson, D. R. (2019). Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage. BMC Evolutionary Biology, 19(1), 129 (11 pp.). https://doi.org/10.1186/s12862-019-1458-4
Bridging the holistic-reductionist divide in microbial ecology
Tecon, R., Mitri, S., Ciccarese, D., Or, D., van der Meer, J. R., & Johnson, D. R. (2019). Bridging the holistic-reductionist divide in microbial ecology. mSystems, 4(1), e00265-18 (5 pp.). https://doi.org/10.1128/mSystems.00265-18
Transcriptome analysis of the mobile genome ICE<i>clc</i> in <i>Pseudomonas knackmussii</i> B13
Gaillard, M., Pradervand, N., Minoia, M., Sentchilo, V., Johnson, D. R., & van der Meer, J. R. (2010). Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiology, 10, 153 (14 pp.). https://doi.org/10.1186/1471-2180-10-153
Metabolite toxicity determines the pace of molecular evolution within microbial populations
Lilja, E. E., & Johnson, D. R. (2017). Metabolite toxicity determines the pace of molecular evolution within microbial populations. BMC Evolutionary Biology, 17, 52 (12 pp.). https://doi.org/10.1186/s12862-017-0906-2
A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations
Marchal, M., Goldschmidt, F., Derksen-Müller, S. N., Panke, S., Ackermann, M., & Johnson, D. R. (2017). A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations. BMC Evolutionary Biology, 17, 106 (14 pp.). https://doi.org/10.1186/s12862-017-0950-y
A combination of extreme environmental conditions favor the prevalence of endospore-forming firmicutes
Filippidou, S., Wunderlin, T., Junier, T., Jeanneret, N., Dorador, C., Molina, V., … Junier, P. (2016). A combination of extreme environmental conditions favor the prevalence of endospore-forming firmicutes. Frontiers in Microbiology, 7, 1707 (11 pp.). https://doi.org/10.3389/fmicb.2016.01707
Synthetic microbial ecology and the dynamic interplay between microbial genotypes
Dolinšek, J., Goldschmidt, F., & Johnson, D. R. (2016). Synthetic microbial ecology and the dynamic interplay between microbial genotypes. FEMS Microbiology Reviews, 40(6), 961-979. https://doi.org/10.1093/femsre/fuw024
Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation
Men, Y., Achermann, S., Helbling, D. E., Johnson, D. R., & Fenner, K. (2017). Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation. Water Research, 109, 217-226. https://doi.org/10.1016/j.watres.2016.11.048
Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon <I>Nitrososphaera gargensis</I>
Men, Y., Han, P., Helbling, D. E., Jehmlich, N., Herbold, C., Gulde, R., … Fenner, K. (2016). Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis. Environmental Science and Technology, 50(9), 4682-4692. https://doi.org/10.1021/acs.est.5b06016
Genome-wide analysis of salicylate and dibenzofuran metabolism in &lt;em&gt;Sphingomonas wittichii&lt;/em&gt; RW1
Coronado, E., Roggo, C., Johnson, D. R., & van der Meer, J. R. (2012). Genome-wide analysis of salicylate and dibenzofuran metabolism in Sphingomonas wittichii RW1. Frontiers in Microbiology, 3, 300 (13 pp.). https://doi.org/10.3389/fmicb.2012.00300
Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products?
Johnson, D. R., Helbling, D. E., Men, Y., & Fenner, K. (2015). Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products? Environmental Science: Water Research and Technology, 1(3), 272-278. https://doi.org/10.1039/c5ew00016e
Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium <I>Sphingomonas wittichii</I>
Johnson, D. R., Coronado, E., Moreno-Forero, S. K., Heipieper, H. J., & van der Meer, J. R. (2011). Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii. BMC Microbiology, 11, 250 (12 pp.). https://doi.org/10.1186/1471-2180-11-250
Association of biodiversity with the rates of micropollutant biotransformations among full-scale wastewater treatment plant communities
Johnson, D. R., Helbling, D. E., Lee, T. K., Park, J., Fenner, K., Kohler, H. P. E., & Ackermann, M. (2015). Association of biodiversity with the rates of micropollutant biotransformations among full-scale wastewater treatment plant communities. Applied and Environmental Microbiology, 81(2), 666-675. https://doi.org/10.1128/AEM.03286-14
Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of <I>Sphingomonas</I> sp. strain LH128 in biofilms
Fida, T. T., Breugelmans, P., Lavigne, R., Coronado, E., Johnson, D. R., van der Meer, J. R., … Springael, D. (2012). Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms. Applied and Environmental Microbiology, 78(23), 8311-8320. https://doi.org/10.1128/AEM.02516-12