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Optimizing laboratory cultures of <em>Gammarus fossarum</em> (Crustacea: Amphipoda) as a study organism in environmental sciences and ecotoxicology
Alther, R., Krähenbühl, A., Bucher, P., & Altermatt, F. (2023). Optimizing laboratory cultures of Gammarus fossarum (Crustacea: Amphipoda) as a study organism in environmental sciences and ecotoxicology. Science of the Total Environment, 855, 158730 (9 pp.). https://doi.org/10.1016/j.scitotenv.2022.158730
Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb
Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511-518. https://doi.org/10.1111/1755-0998.13723
The significance of partial migration for food web and ecosystem dynamics
Peller, T., Guichard, F., & Altermatt, F. (2023). The significance of partial migration for food web and ecosystem dynamics. Ecology Letters, 26(1), 3-22. https://doi.org/10.1111/ele.14143
Tracking a killer shrimp: <em>Dikerogammarus villosus</em> invasion dynamics across Europe
Soto, I., Cuthbert, R. N., Ahmed, D. A., Kouba, A., Domisch, S., Marquez, J. R. G., … Haubrock, P. J. (2023). Tracking a killer shrimp: Dikerogammarus villosus invasion dynamics across Europe. Diversity and Distributions, 29(1), 157-172. https://doi.org/10.1111/ddi.13649
General principles for assignments of communities from eDNA: open versus closed taxonomic databases
Blackman, R. C., Walser, J. ‐C., Rüber, L., Brantschen, J., Villalba, S., Brodersen, J., … Altermatt, F. (2022). General principles for assignments of communities from eDNA: open versus closed taxonomic databases. Environmental DNA. https://doi.org/10.1002/edn3.382
Monitoring invasive alien macroinvertebrate species with environmental DNA
Blackman, R. C., Brantschen, J., Walser, J. C., Wüthrich, R., & Altermatt, F. (2022). Monitoring invasive alien macroinvertebrate species with environmental DNA. River Research and Applications, 38(8), 1400-1412. https://doi.org/10.1002/rra.3947
Spatio-temporal patterns of multi-trophic biodiversity and food-web characteristics uncovered across a river catchment using environmental DNA
Blackman, R. C., Ho, H. C., Walser, J. C., & Altermatt, F. (2022). Spatio-temporal patterns of multi-trophic biodiversity and food-web characteristics uncovered across a river catchment using environmental DNA. Communications Biology, 5, 259 (11 pp.). https://doi.org/10.1038/s42003-022-03216-z
A hotspot of groundwater amphipod diversity on a crossroad of evolutionary radiations
Borko, Š., Altermatt, F., Zagmajster, M., & Fišer, C. (2022). A hotspot of groundwater amphipod diversity on a crossroad of evolutionary radiations. Diversity and Distributions, 28(12), 2765-2777. https://doi.org/10.1111/ddi.13500
Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region
Brantschen, J., Pellissier, L., Walser, J. C., & Altermatt, F. (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6), 1356-1368. https://doi.org/10.1002/edn3.342
The importance of indirect effects of climate change adaptations on alpine and pre‐alpine freshwater systems
Brosse, M., Benateau, S., Gaudard, A., Stamm, C., & Altermatt, F. (2022). The importance of indirect effects of climate change adaptations on alpine and pre‐alpine freshwater systems. Ecological Solutions and Evidence, 3(1), e12127 (8 pp.). https://doi.org/10.1002/2688-8319.12127
Optimal Channel Networks accurately model ecologically-relevant geomorphological features of branching river networks
Carraro, L., & Altermatt, F. (2022). Optimal Channel Networks accurately model ecologically-relevant geomorphological features of branching river networks. Communications Earth & Environment, 3, 125 (10 pp.). https://doi.org/10.1038/s43247-022-00454-1
Dispersal syndromes in challenging environments: a cross-species experiment
Cote, J., Dahirel, M., Schtickzelle, N., Altermatt, F., Ansart, A., Blanchet, S., … Legrand, D. (2022). Dispersal syndromes in challenging environments: a cross-species experiment. Ecology Letters, 25(12), 2675-2687. https://doi.org/10.1111/ele.14124
The European Green Deal misses Europe's subterranean biodiversity hotspots
Fišer, C., Borko, Š., Delić, T., Kos, A., Premate, E., Zagmajster, M., … Altermatt, F. (2022). The European Green Deal misses Europe's subterranean biodiversity hotspots. Nature Ecology & Evolution, 6, 1403-1404. https://doi.org/10.1038/s41559-022-01859-z
Recent trends in stream macroinvertebrates: warm-adapted and pesticide-tolerant taxa increase in richness
Gebert, F., Obrist, M. K., Siber, R., Altermatt, F., Bollmann, K., & Schuwirth, N. (2022). Recent trends in stream macroinvertebrates: warm-adapted and pesticide-tolerant taxa increase in richness. Biology Letters, 18(3), 20210513 (7 pp.). https://doi.org/10.1098/rsbl.2021.0513
Blue and green food webs respond differently to elevation and land use
Ho, H. C., Brodersen, J., Gossner, M. M., Graham, C. H., Kaeser, S., Reji Chacko, M., … Altermatt, F. (2022). Blue and green food webs respond differently to elevation and land use. Nature Communications, 13(1), 6415 (12 pp.). https://doi.org/10.1038/s41467-022-34132-9
Patch size distribution affects species invasion dynamics in dendritic networks
Holenstein, K., Harvey, E., & Altermatt, F. (2022). Patch size distribution affects species invasion dynamics in dendritic networks. Oikos, 2022, e08679 (11 pp.). https://doi.org/10.1111/oik.08679
Meta‐ecosystem dynamics drive the spatial distribution of functional groups in river networks
Jacquet, C., Carraro, L., & Altermatt, F. (2022). Meta‐ecosystem dynamics drive the spatial distribution of functional groups in river networks. Oikos, 2022(11), e09372 (12 pp.). https://doi.org/10.1111/oik.09372
Climate, immigration and speciation shape terrestrial and aquatic biodiversity in the European Alps
Jardim de Queiroz, L., Doenz, C. J., Altermatt, F., Alther, R., Borko, Š., Brodersen, J., … Seehausen, O. (2022). Climate, immigration and speciation shape terrestrial and aquatic biodiversity in the European Alps. Proceedings of the Royal Society B: Biological Sciences, 289(1980), 20221020 (10 pp.). https://doi.org/10.1098/rspb.2022.1020
A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers
Keck, F., Hürlemann, S., Locher, N., Stamm, C., Deiner, K., & Altermatt, F. (2022). A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers. Metabarcoding and Metagenomics, 6, 117-131. https://doi.org/10.3897/mbmg.6.79351
Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
Keck, F., Blackman, R. C., Bossart, R., Brantschen, J., Couton, M., Hürlemann, S., … Altermatt, F. (2022). Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology, 31(6), 1820-1835. https://doi.org/10.1111/mec.16364
 

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