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Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika
Ehrenfels, B., Baumann, K. B. L., Niederdorfer, R., Mbonde, A. S., Kimirei, I. A., Kuhn, T., … Callbeck, C. M. (2023). Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika. Nature Communications, 14, 6591 (13 pp.). https://doi.org/10.1038/s41467-023-42391-3
Dynamics of antibiotic resistance markers and <em>Escherichia coli</em> invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation
Gionchetta, G., Snead, D., Semerad, S., Beck, K., Pruden, A., & Bürgmann, H. (2023). Dynamics of antibiotic resistance markers and Escherichia coli invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation. Science of the Total Environment, 893, 164658 (11 pp.). https://doi.org/10.1016/j.scitotenv.2023.164658
Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes
Han, X., Beck, K., Bürgmann, H., Frey, B., Stierli, B., & Frossard, A. (2023). Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes. Frontiers in Microbiology, 14, 1279041 (11 pp.). https://doi.org/10.3389/fmicb.2023.1279041
Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats
Lee, J., Ju, F., Beck, K., & Bürgmann, H. (2023). Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats. ISME Journal, 17, 1993-2002. https://doi.org/10.1038/s41396-023-01506-w
Toward a universal unit for quantification of antibiotic resistance genes in environmental samples
Yin, X., Chen, X., Jiang, X. T., Yang, Y., Li, B., Shum, M. H. H., … Zhang, T. (2023). Toward a universal unit for quantification of antibiotic resistance genes in environmental samples. Environmental Science and Technology, 57(26), 9713-9721. https://doi.org/10.1021/acs.est.3c00159
Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable
Baumann, K. B. L., Thoma, R., Callbeck, C. M., Niederdorfer, R., Schubert, C. J., Müller, B., … Bürgmann, H. (2022). Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable. mSphere, 7(1), e01013-21 (20 pp.). https://doi.org/10.1128/msphere.01013-21
Antimicrobial resistance in wastewater, mixed overflows and surface water: insight into the results of the NRP 72
Bürgmann, H., Tschudin-Sutter, S., & Stephan, R. (2022). Antimicrobial resistance in wastewater, mixed overflows and surface water: insight into the results of the NRP 72. In D. Müller Brodmann, D. Heim, & S. Gottwalt (Eds.), Swiss antibiotic resistance report 2022. Usage of antibiotics and occurrence of antibiotic resistance in Switzerland (pp. 165-167). Federal Office of Public Health (FOPH).
Routes and reservoirs of AMR-determinants &amp; one health AMR-surveillance. Thematic synthesis of the national research programme "Antimicrobial Resistance"
Bürgmann, H., Egli, A., Endimiani, A., Stephan, R., Tschudin Sutter, S., & Hardt, W. D. (2022). Routes and reservoirs of AMR-determinants & one health AMR-surveillance. Thematic synthesis of the national research programme "Antimicrobial Resistance". National Research Programme “Antimicrobial Resistance” (NRP 72).
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
Dai, D., Brown, C., Bürgmann, H., Larsson, D. G. J., Nambi, I., Zhang, T., … Vikesland, P. J. (2022). Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Microbiome, 10(1), 20 (16 pp.). https://doi.org/10.1186/s40168-021-01216-5
Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal
Freudenthal, J., Ju, F., Bürgmann, H., & Dumack, K. (2022). Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal. Microbiome, 10, 27 (12 pp.). https://doi.org/10.1186/s40168-022-01225-y
Successful mainstream nitritation through NOB inactivation
Hausherr, D., Niederdorfer, R., Bürgmann, H., Lehmann, M. F., Magyar, P., Mohn, J., … Joss, A. (2022). Successful mainstream nitritation through NOB inactivation. Science of the Total Environment, 822, 153546 (11 pp.). https://doi.org/10.1016/j.scitotenv.2022.153546
Successful year-round mainstream partial nitritation anammox: assessment of effluent quality, performance and N<sub>2</sub>O emissions
Hausherr, D., Niederdorfer, R., Bürgmann, H., Lehmann, M. F., Magyar, P., Mohn, J., … Joss, A. (2022). Successful year-round mainstream partial nitritation anammox: assessment of effluent quality, performance and N2O emissions. Water Research X, 16, 100145 (11 pp.). https://doi.org/10.1016/j.wroa.2022.100145
Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river
Lee, J., Beck, K., & Bürgmann, H. (2022). Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river. Water Research, 208, 117827 (12 pp.). https://doi.org/10.1016/j.watres.2021.117827
Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes
Prieto Riquelme, M. V., Garner, E., Gupta, S., Metch, J., Zhu, N., Blair, M. F., … Vikesland, P. J. (2022). Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes. Environmental Science and Technology, 56(21), 14982-14993. https://doi.org/10.1021/acs.est.1c08673
The role of the microbial communities in the nitrogen cycle of freshwater lakes
Saribekyan-Baumann, K. B. L. (2022). The role of the microbial communities in the nitrogen cycle of freshwater lakes [Doctoral dissertation]. ETH Zurich.
Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake
Zimmermann, M., Mayr, M. J., Bouffard, D., Wehrli, B., & Bürgmann, H. (2022). Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake. Frontiers in Environmental Science, 10, 833511 (15 pp.). https://doi.org/10.3389/fenvs.2022.833511
Linking seasonal N<sub>2</sub>O emissions and nitrification failures to microbial dynamics in a SBR wastewater treatment plant
Gruber, W., Niederdorfer, R., Ringwald, J., Morgenroth, E., Bürgmann, H., & Joss, A. (2021). Linking seasonal N2O emissions and nitrification failures to microbial dynamics in a SBR wastewater treatment plant. Water Research X, 11, 100098 (13 pp.). https://doi.org/10.1016/j.wroa.2021.100098
Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective
Lee, J. (2021). Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000514663
Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs
Lee, J., Ju, F., Maile-Moskowitz, A., Beck, K., Maccagnan, A., McArdell, C. S., … Bürgmann, H. (2021). Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs. Water Research, 197, 117050 (12 pp.). https://doi.org/10.1016/j.watres.2021.117050
Nitrogen isotope effects can be used to diagnose N transformations in wastewater anammox systems
Magyar, P. M., Hausherr, D., Niederdorfer, R., Stöcklin, N., Wei, J., Mohn, J., … Lehmann, M. F. (2021). Nitrogen isotope effects can be used to diagnose N transformations in wastewater anammox systems. Scientific Reports, 11(1), 7850 (12 pp.). https://doi.org/10.1038/s41598-021-87184-0
 

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