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Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika
Ehrenfels, B., Baumann, K. B. L., Niederdorfer, R., Mbonde, A. S., Kimirei, I. A., Kuhn, T., … Callbeck, C. M. (2023). Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika. Nature Communications, 14, 6591 (13 pp.). https://doi.org/10.1038/s41467-023-42391-3
Dynamics of antibiotic resistance markers and <em>Escherichia coli</em> invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation
Gionchetta, G., Snead, D., Semerad, S., Beck, K., Pruden, A., & Bürgmann, H. (2023). Dynamics of antibiotic resistance markers and Escherichia coli invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation. Science of the Total Environment, 893, 164658 (11 pp.). https://doi.org/10.1016/j.scitotenv.2023.164658
Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes
Han, X., Beck, K., Bürgmann, H., Frey, B., Stierli, B., & Frossard, A. (2023). Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes. Frontiers in Microbiology, 14, 1279041 (11 pp.). https://doi.org/10.3389/fmicb.2023.1279041
Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats
Lee, J., Ju, F., Beck, K., & Bürgmann, H. (2023). Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats. ISME Journal, 17, 1993-2002. https://doi.org/10.1038/s41396-023-01506-w
Toward a universal unit for quantification of antibiotic resistance genes in environmental samples
Yin, X., Chen, X., Jiang, X. T., Yang, Y., Li, B., Shum, M. H. H., … Zhang, T. (2023). Toward a universal unit for quantification of antibiotic resistance genes in environmental samples. Environmental Science and Technology, 57(26), 9713-9721. https://doi.org/10.1021/acs.est.3c00159
Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable
Baumann, K. B. L., Thoma, R., Callbeck, C. M., Niederdorfer, R., Schubert, C. J., Müller, B., … Bürgmann, H. (2022). Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable. mSphere, 7(1), e01013-21 (20 pp.). https://doi.org/10.1128/msphere.01013-21
Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss
Bürgmann, H., Lee, J., & Erb, S. (2022). Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss. Aqua & Gas, 102(7-8), 42-48.
Antimicrobial resistance in wastewater, mixed overflows and surface water: insight into the results of the NRP 72
Bürgmann, H., Tschudin-Sutter, S., & Stephan, R. (2022). Antimicrobial resistance in wastewater, mixed overflows and surface water: insight into the results of the NRP 72. In D. Müller Brodmann, D. Heim, & S. Gottwalt (Eds.), Swiss antibiotic resistance report 2022. Usage of antibiotics and occurrence of antibiotic resistance in Switzerland (pp. 165-167). Federal Office of Public Health (FOPH).
Routes and reservoirs of AMR-determinants &amp; one health AMR-surveillance. Thematic synthesis of the national research programme "Antimicrobial Resistance"
Bürgmann, H., Egli, A., Endimiani, A., Stephan, R., Tschudin Sutter, S., & Hardt, W. D. (2022). Routes and reservoirs of AMR-determinants & one health AMR-surveillance. Thematic synthesis of the national research programme "Antimicrobial Resistance". National Research Programme “Antimicrobial Resistance” (NRP 72).
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
Dai, D., Brown, C., Bürgmann, H., Larsson, D. G. J., Nambi, I., Zhang, T., … Vikesland, P. J. (2022). Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Microbiome, 10(1), 20 (16 pp.). https://doi.org/10.1186/s40168-021-01216-5
Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal
Freudenthal, J., Ju, F., Bürgmann, H., & Dumack, K. (2022). Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal. Microbiome, 10, 27 (12 pp.). https://doi.org/10.1186/s40168-022-01225-y
Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river
Lee, J., Beck, K., & Bürgmann, H. (2022). Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river. Water Research, 208, 117827 (12 pp.). https://doi.org/10.1016/j.watres.2021.117827
Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes
Prieto Riquelme, M. V., Garner, E., Gupta, S., Metch, J., Zhu, N., Blair, M. F., … Vikesland, P. J. (2022). Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes. Environmental Science and Technology, 56(21), 14982-14993. https://doi.org/10.1021/acs.est.1c08673
The role of the microbial communities in the nitrogen cycle of freshwater lakes
Saribekyan-Baumann, K. B. L. (2022). The role of the microbial communities in the nitrogen cycle of freshwater lakes [Doctoral dissertation]. ETH Zurich.
Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake
Zimmermann, M., Mayr, M. J., Bouffard, D., Wehrli, B., & Bürgmann, H. (2022). Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake. Frontiers in Environmental Science, 10, 833511 (15 pp.). https://doi.org/10.3389/fenvs.2022.833511
Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective
Lee, J. (2021). Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000514663
Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants
Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J., Smets, B. F., … Ju, F. (2021). Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants. Environmental Science and Technology, 55(15), 10862-10874. https://doi.org/10.1021/acs.est.1c02483
Microbial methane oxidation efficiency and robustness during lake overturn
Zimmermann, M., Mayr, M. J., Bürgmann, H., Eugster, W., Steinsberger, T., Wehrli, B., … Bouffard, D. (2021). Microbial methane oxidation efficiency and robustness during lake overturn. Limnology and Oceanography Letters, 6(6), 320-328. https://doi.org/10.1002/lol2.10209
Every fifth published metagenome is not available to science
Eckert, E. M., Di Cesare, A., Fontaneto, D., Berendonk, T. U., Bürgmann, H., Cytryn, E., … Corno, G. (2020). Every fifth published metagenome is not available to science. PLoS Biology, 18(4), e3000698 (7 pp.). https://doi.org/10.1371/journal.pbio.3000698
Environmental and microbial interactions shape methane-oxidizing bacterial communities in a stratified lake
Guggenheim, C., Freimann, R., Mayr, M. J., Beck, K., Wehrli, B., & Bürgmann, H. (2020). Environmental and microbial interactions shape methane-oxidizing bacterial communities in a stratified lake. Frontiers in Microbiology, 11, 579427 (16 pp.). https://doi.org/10.3389/fmicb.2020.579427
 

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