| Dynamics of antibiotic resistance markers and <em>Escherichia coli</em> invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation
Gionchetta, G., Snead, D., Semerad, S., Beck, K., Pruden, A., & Bürgmann, H. (2023). Dynamics of antibiotic resistance markers and Escherichia coli invasion in riverine heterotrophic biofilms facing increasing heat and flow stagnation. Science of the Total Environment, 893, 164658 (11 pp.). https://doi.org/10.1016/j.scitotenv.2023.164658 |
| Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes
Han, X., Beck, K., Bürgmann, H., Frey, B., Stierli, B., & Frossard, A. (2023). Synthetic oligonucleotides as quantitative PCR standards for quantifying microbial genes. Frontiers in Microbiology, 14, 1279041 (11 pp.). https://doi.org/10.3389/fmicb.2023.1279041 |
| Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats
Lee, J., Ju, F., Beck, K., & Bürgmann, H. (2023). Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats. ISME Journal, 17, 1993-2002. https://doi.org/10.1038/s41396-023-01506-w |
| Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable
Baumann, K. B. L., Thoma, R., Callbeck, C. M., Niederdorfer, R., Schubert, C. J., Müller, B., … Bürgmann, H. (2022). Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable. mSphere, 7(1), e01013-21 (20 pp.). https://doi.org/10.1128/msphere.01013-21 |
| Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss
Bürgmann, H., Lee, J., & Erb, S. (2022). Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss. Aqua & Gas, 102(7-8), 42-48. |
| Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
Dai, D., Brown, C., Bürgmann, H., Larsson, D. G. J., Nambi, I., Zhang, T., … Vikesland, P. J. (2022). Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Microbiome, 10(1), 20 (16 pp.). https://doi.org/10.1186/s40168-021-01216-5 |
| Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal
Freudenthal, J., Ju, F., Bürgmann, H., & Dumack, K. (2022). Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal. Microbiome, 10, 27 (12 pp.). https://doi.org/10.1186/s40168-022-01225-y |
| Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river
Lee, J., Beck, K., & Bürgmann, H. (2022). Wastewater bypass is a major temporary point-source of antibiotic resistance genes and multi-resistance risk factors in a Swiss river. Water Research, 208, 117827 (12 pp.). https://doi.org/10.1016/j.watres.2021.117827 |
| Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes
Prieto Riquelme, M. V., Garner, E., Gupta, S., Metch, J., Zhu, N., Blair, M. F., … Vikesland, P. J. (2022). Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes. Environmental Science and Technology, 56(21), 14982-14993. https://doi.org/10.1021/acs.est.1c08673 |
| Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective
Lee, J. (2021). Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000514663 |
| Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs
Lee, J., Ju, F., Maile-Moskowitz, A., Beck, K., Maccagnan, A., McArdell, C. S., … Bürgmann, H. (2021). Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs. Water Research, 197, 117050 (12 pp.). https://doi.org/10.1016/j.watres.2021.117050 |
| Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants
Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J., Smets, B. F., … Ju, F. (2021). Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants. Environmental Science and Technology, 55(15), 10862-10874. https://doi.org/10.1021/acs.est.1c02483 |
| Every fifth published metagenome is not available to science
Eckert, E. M., Di Cesare, A., Fontaneto, D., Berendonk, T. U., Bürgmann, H., Cytryn, E., … Corno, G. (2020). Every fifth published metagenome is not available to science. PLoS Biology, 18(4), e3000698 (7 pp.). https://doi.org/10.1371/journal.pbio.3000698 |
| A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants
Marano, R. B. M., Fernandes, T., Manaia, C. M., Nunes, O., Morrison, D., Berendonk, T. U., … Cytryn, E. (2020). A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants. Environment International, 144, 106035 (11 pp.). https://doi.org/10.1016/j.envint.2020.106035 |
| Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
Mayr, M. J., Zimmermann, M., Guggenheim, C., Brand, A., & Bürgmann, H. (2020). Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes. ISME Journal, 14, 274-287. https://doi.org/10.1038/s41396-019-0515-8 |
| Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
Ju, F., Beck, K., Yin, X., Maccagnan, A., McArdell, C. S., Singer, H. P., … Bürgmann, H. (2019). Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. ISME Journal, 13(2), 346-360. https://doi.org/10.1038/s41396-018-0277-8 |
| Predator-induced changes in dissolved organic carbon dynamics
Limberger, R., Birtel, J., Peter, H., Catalán, N., da Silva Farias, D., Best, R. J., … Matthews, B. (2019). Predator-induced changes in dissolved organic carbon dynamics. Oikos, 128(3), 430-440. https://doi.org/10.1111/oik.05673 |
| Water and sanitation: an essential battlefront in the war on antimicrobial resistance
Bürgmann, H., Frigon, D., Gaze, W., Manaia, C., Pruden, A., Singer, A. C., … Zhang, T. (2018). Water and sanitation: an essential battlefront in the war on antimicrobial resistance. FEMS Microbiology Ecology, 94(9), fiy101 (14 pp.). https://doi.org/10.1093/femsec/fiy101 |
| A historical legacy of antibiotic utilization on bacterial seed banks in sediments
Madueño, L., Paul, C., Junier, T., Bayrychenko, Z., Filippidou, S., Beck, K., … Junier, P. (2018). A historical legacy of antibiotic utilization on bacterial seed banks in sediments. PeerJ, 6, e4197 (19 pp.). https://doi.org/10.7717/peerj.4197 |
| Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater
Paul, C., Bayrychenko, Z., Junier, T., Filippidou, S., Beck, K., Bueche, M., … Junier, P. (2018). Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater. PeerJ, 6, e4989 (24 pp.). https://doi.org/10.7717/peerj.4989 |