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Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika
Ehrenfels, B., Baumann, K. B. L., Niederdorfer, R., Mbonde, A. S., Kimirei, I. A., Kuhn, T., … Callbeck, C. M. (2023). Hydrodynamic regimes modulate nitrogen fixation and the mode of diazotrophy in Lake Tanganyika. Nature Communications, 14, 6591 (13 pp.). https://doi.org/10.1038/s41467-023-42391-3
Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss
Bürgmann, H., Lee, J., & Erb, S. (2022). Antibiotikaresistenz bei Wasserbakterien. Sind nur grosse resistent? Durchflusszytometrie verknüpft mit Molekularbiologie gibt Aufschluss. Aqua & Gas, 102(7-8), 42-48.
Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes
Prieto Riquelme, M. V., Garner, E., Gupta, S., Metch, J., Zhu, N., Blair, M. F., … Vikesland, P. J. (2022). Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes. Environmental Science and Technology, 56(21), 14982-14993. https://doi.org/10.1021/acs.est.1c08673
Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake
Zimmermann, M., Mayr, M. J., Bouffard, D., Wehrli, B., & Bürgmann, H. (2022). Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake. Frontiers in Environmental Science, 10, 833511 (15 pp.). https://doi.org/10.3389/fenvs.2022.833511
Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal
Freudenthal, J., Ju, F., Bürgmann, H., & Dumack, K. (2022). Microeukaryotic gut parasites in wastewater treatment plants: diversity, activity, and removal. Microbiome, 10, 27 (12 pp.). https://doi.org/10.1186/s40168-022-01225-y
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
Dai, D., Brown, C., Bürgmann, H., Larsson, D. G. J., Nambi, I., Zhang, T., … Vikesland, P. J. (2022). Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. Microbiome, 10(1), 20 (16 pp.). https://doi.org/10.1186/s40168-021-01216-5
Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable
Baumann, K. B. L., Thoma, R., Callbeck, C. M., Niederdorfer, R., Schubert, C. J., Müller, B., … Bürgmann, H. (2022). Microbial nitrogen transformation potential in sediments of two contrasting lakes is spatially structured but seasonally stable. mSphere, 7(1), e01013-21 (20 pp.). https://doi.org/10.1128/msphere.01013-21
Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective
Lee, J. (2021). Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000514663
Microbial methane oxidation efficiency and robustness during lake overturn
Zimmermann, M., Mayr, M. J., Bürgmann, H., Eugster, W., Steinsberger, T., Wehrli, B., … Bouffard, D. (2021). Microbial methane oxidation efficiency and robustness during lake overturn. Limnology and Oceanography Letters, 6(6), 320-328. https://doi.org/10.1002/lol2.10209
Modelling perspectives on microbial methane oxidation in stratified lakes
Zimmermann, M. (2019). Modelling perspectives on microbial methane oxidation in stratified lakes [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000423771
The role of copper for methane-oxidizing bacteria in lakes
Guggenheim, C. S. (2018). The role of copper for methane-oxidizing bacteria in lakes [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000337932
Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants
Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J., Smets, B. F., … Ju, F. (2021). Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants. Environmental Science and Technology, 55(15), 10862-10874. https://doi.org/10.1021/acs.est.1c02483
Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage
Mayr, M. J., Zimmermann, M., Dey, J., Wehrli, B., & Bürgmann, H. (2020). Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage. Biogeosciences, 17(16), 4247-4259. https://doi.org/10.5194/bg-17-4247-2020
Every fifth published metagenome is not available to science
Eckert, E. M., Di Cesare, A., Fontaneto, D., Berendonk, T. U., Bürgmann, H., Cytryn, E., … Corno, G. (2020). Every fifth published metagenome is not available to science. PLoS Biology, 18(4), e3000698 (7 pp.). https://doi.org/10.1371/journal.pbio.3000698
Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn
Mayr, M. J., Zimmermann, M., Dey, J., Brand, A., Wehrli, B., & Bürgmann, H. (2020). Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn. Communications Biology, 3, 108 (9 pp.). https://doi.org/10.1038/s42003-020-0838-z
Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
Mayr, M. J., Zimmermann, M., Guggenheim, C., Brand, A., & Bürgmann, H. (2020). Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes. ISME Journal, 14, 274-287. https://doi.org/10.1038/s41396-019-0515-8
Aerobic methane oxidation under copper scarcity in a stratified lake
Guggenheim, C., Brand, A., Bürgmann, H., Sigg, L., & Wehrli, B. (2019). Aerobic methane oxidation under copper scarcity in a stratified lake. Scientific Reports, 9, 4817 (11 pp.). https://doi.org/10.1038/s41598-019-40642-2
Predator-induced changes in dissolved organic carbon dynamics
Limberger, R., Birtel, J., Peter, H., Catalán, N., da Silva Farias, D., Best, R. J., … Matthews, B. (2019). Predator-induced changes in dissolved organic carbon dynamics. Oikos, 128(3), 430-440. https://doi.org/10.1111/oik.05673
Water and sanitation: an essential battlefront in the war on antimicrobial resistance
Bürgmann, H., Frigon, D., Gaze, W., Manaia, C., Pruden, A., Singer, A. C., … Zhang, T. (2018). Water and sanitation: an essential battlefront in the war on antimicrobial resistance. FEMS Microbiology Ecology, 94(9), fiy101 (14 pp.). https://doi.org/10.1093/femsec/fiy101
Bacteria-induced mixing in natural waters
Sommer, T., Danza, F., Berg, J., Sengupta, A., Constantinescu, G., Tokyay, T., … Wüest, A. (2017). Bacteria-induced mixing in natural waters. Geophysical Research Letters, 44(18), 9424-9432. https://doi.org/10.1002/2017GL074868