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Genomic architecture of adaptive radiation and hybridization in Alpine whitefish
De-Kayne, R., Selz, O. M., Marques, D. A., Frei, D., Seehausen, O., & Feulner, P. G. D. (2022). Genomic architecture of adaptive radiation and hybridization in Alpine whitefish. Nature Communications, 13(1), 4479 (13 pp.). https://doi.org/10.1038/s41467-022-32181-8
Genomic variation from an extinct species is retained in the extant radiation following speciation reversal
Frei, D., De-Kayne, R., Selz, O. M., Seehausen, O., & Feulner, P. G. D. (2022). Genomic variation from an extinct species is retained in the extant radiation following speciation reversal. Nature Ecology & Evolution, 6, 461-468. https://doi.org/10.1038/s41559-022-01665-7
Introgression from extinct species facilitates adaptation to its vacated niche
Frei, D., Reichlin, P., Seehausen, O., & Feulner, P. G. D. (2022). Introgression from extinct species facilitates adaptation to its vacated niche. Molecular Ecology. https://doi.org/10.1111/mec.16791
Strong selection and high mutation supply characterize experimental<em> Chlorovirus </em>evolution
Retel, C., Kowallik, V., Becks, L., & Feulner, P. G. D. (2022). Strong selection and high mutation supply characterize experimental Chlorovirus evolution. Virus Evolution, 8(1), veac003 (14 pp.). https://doi.org/10.1093/ve/veac003
Sequencing platform shifts provide opportunities but pose challenges for combining genomic datasets
De‐Kayne, R., Frei, D., Greenway, R., Mendes, S. L., Retel, C., & Feulner, P. G. D. (2021). Sequencing platform shifts provide opportunities but pose challenges for combining genomic datasets. Molecular Ecology Resources, 21(3), 653-660. https://doi.org/10.1111/1755-0998.13309
Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'
Seppälä, O., Çetin, C., Cereghetti, T., Feulner, P. G. D., & Adema, C. M. (2021). Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1825), 20200158 (9 pp.). https://doi.org/10.1098/rstb.2020.0158
&lt;em&gt;A de novo&lt;/em&gt; chromosome-level genome assembly of &lt;em&gt;Coregonus sp. &quot;Balchen&quot;&lt;/em&gt;: one representative of the Swiss Alpine whitefish radiation
De-Kayne, R., Zoller, S., & Feulner, P. G. D. (2020). A de novo chromosome-level genome assembly of Coregonus sp. "Balchen": one representative of the Swiss Alpine whitefish radiation. Molecular Ecology Resources, 20(4), 1093-1109. https://doi.org/10.1111/1755-0998.13187
Genomic insights into the vulnerability of sympatric whitefish species flocks
Feulner, P. G. D., & Seehausen, O. (2019). Genomic insights into the vulnerability of sympatric whitefish species flocks. Molecular Ecology, 28, 615-629. https://doi.org/10.1111/mec.14977
Genome-wide genotype-expression relationships reveal both copy number and single nucleotide differentiation contribute to differential gene expression between stickleback ecotypes
Huang, Y., Feulner, P. G. D., Eizaguirre, C., Lenz, T. L., Bornberg-Bauer, E., Milinski, M., … Chain, F. J. J. (2019). Genome-wide genotype-expression relationships reveal both copy number and single nucleotide differentiation contribute to differential gene expression between stickleback ecotypes. Genome Biology and Evolution, 11(8), 2344-2359. https://doi.org/10.1093/gbe/evz148
Ecological and evolutionary processes shaping viral genetic diversity
Retel, C., Märkle, H., Becks, L., & Feulner, P. G. D. (2019). Ecological and evolutionary processes shaping viral genetic diversity. Viruses, 11(3), 220 (16 pp.). https://doi.org/10.3390/v11030220
The feedback between selection and demography shapes genomic diversity during coevolution
Retel, C., Kowallik, V., Huang, W., Werner, B., Künzel, S., Becks, L., & Feulner, P. G. D. (2019). The feedback between selection and demography shapes genomic diversity during coevolution. Science Advances, 5(10), eaax0530 (9 pp.). https://doi.org/10.1126/sciadv.aax0530
A European whitefish linkage map and its implications for understanding genome-wide synteny between salmonids following whole genome duplication
De-Kayne, R., & Feulner, P. G. D. (2018). A European whitefish linkage map and its implications for understanding genome-wide synteny between salmonids following whole genome duplication. G3: Genes, Genomes, Genetics, 8(12), 3745-3755. https://doi.org/10.1534/g3.118.200552
A dense linkage map of Lake Victoria cichlids improved the <em>Pundamilia</em> genome assembly and revealed a major QTL for sex-determination
Feulner, P. G. D., Schwarzer, J., Haesler, M. P., Meier, J. I., & Seehausen, O. (2018). A dense linkage map of Lake Victoria cichlids improved the Pundamilia genome assembly and revealed a major QTL for sex-determination. G3: Genes, Genomes, Genetics, 8(7), 2411-2420. https://doi.org/10.1534/g3.118.200207
Population size changes and selection drive patterns of parallel evolution in a host–virus system
Frickel, J., Feulner, P. G. D., Karakoc, E., & Becks, L. (2018). Population size changes and selection drive patterns of parallel evolution in a host–virus system. Nature Communications, 9(1), 1760 (10 pp.). https://doi.org/10.1038/s41467-018-03990-7
Evolution as an ecosystem process: insights from genomics
Matthews, B., Best, R. J., Feulner, P. G. D., Narwani, A., & Limberger, R. (2018). Evolution as an ecosystem process: insights from genomics. Genome, 61(4), 298-309. https://doi.org/10.1139/gen-2017-0044
Artenvielfalt und Zusammensetzung der Fischgemeinschaft im Zürichsee
Alexander, T. J., Vonlanthen, P., Seehausen, O., Périat, G., Selz, O. M., & Feulner, P. G. D. (2017). Artenvielfalt und Zusammensetzung der Fischgemeinschaft im Zürichsee. Eawag.
Genome evolution, structural rearrangements and speciation
Feulner, P. G. D., & De-Kayne, R. (2017). Genome evolution, structural rearrangements and speciation. Journal of Evolutionary Biology, 30(8), 1488-1490. https://doi.org/10.1111/jeb.13101
Recombination: the good, the bad and the variable
Stapley, J., Feulner, P. G. D., Johnston, S. E., Santure, A. W., & Smadja, C. M. (2017). Recombination: the good, the bad and the variable. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1736), 20170279 (5 pp.). https://doi.org/10.1098/rstb.2017.0279
Variation in recombination frequency and distribution across eukaryotes: patterns and processes
Stapley, J., Feulner, P. G. D., Johnston, S. E., Santure, A. W., & Smadja, C. M. (2017). Variation in recombination frequency and distribution across eukaryotes: patterns and processes. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1736), 20160455 (10 pp.). https://doi.org/10.1098/rstb.2016.0455
Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks
Huang, Y., Chain, F. J. J., Panchal, M., Eizaguirre, C., Kalbe, M., Lenz, T. L., … Feulner, P. G. D. (2016). Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks. Molecular Ecology, 25(4), 943-958. https://doi.org/10.1111/mec.13520