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Influenza transmission dynamics quantified from RNA in wastewater in Switzerland
Nadeau, S., Devaux, A. J., Bagutti, C., Alt, M., Hampe, E. I., Kraus, M., … Stadler, T. (2024). Influenza transmission dynamics quantified from RNA in wastewater in Switzerland. Swiss Medical Weekly, 154(1), 3503 (20 pp.). https://doi.org/10.57187/s.3503
Hands are frequently contaminated with fecal bacteria and enteric pathogens globally: a systematic review and meta-analysis
Cantrell, M. E., Sylvestre, É., Wharton, H. C., Scheidegger, R., Curchod, L., Gute, D. M., … Pickering, A. J. (2023). Hands are frequently contaminated with fecal bacteria and enteric pathogens globally: a systematic review and meta-analysis. ACS Environmental Au, 3(3), 123-134. https://doi.org/10.1021/acsenvironau.2c00039
Legionnaires' disease in Switzerland: rationale and study protocol of a prospective national case–control and molecular source attribution study (<em>SwissLEGIO</em>)
Fischer, F. B., Bigler, M., Mäusezahl, D., Hattendorf, J., Egli, A., Julian, T. R., … Wiggli, B. (2023). Legionnaires' disease in Switzerland: rationale and study protocol of a prospective national case–control and molecular source attribution study (SwissLEGIO). Infection, 51, 1467-1479. https://doi.org/10.1007/s15010-023-02014-x
Wastewater monitoring can anchor global disease surveillance systems
Keshaviah, A., Diamond, M. B., Wade, M. J., Scarpino, S. V., Ahmed, W., Amman, F., … Ort, C. (2023). Wastewater monitoring can anchor global disease surveillance systems. Lancet Global Health, 11(6), e976-e981. https://doi.org/10.1016/S2214-109X(23)00170-5
Waterborne virus transport and the associated risks in a large lake
Li, C., Sylvestre, É., Fernandez-Cassi, X., Julian, T. R., & Kohn, T. (2023). Waterborne virus transport and the associated risks in a large lake. Water Research, 229, 119437 (14 pp.). https://doi.org/10.1016/j.watres.2022.119437
Sensor setpoints that ensure compliance with microbial water quality targets for membrane bioreactor and chlorination treatment in on-site water reuse systems
Reynaert, E., Gretener, F., Julian, T. R., & Morgenroth, E. (2023). Sensor setpoints that ensure compliance with microbial water quality targets for membrane bioreactor and chlorination treatment in on-site water reuse systems. Water Research X, 18, 100164 (13 pp.). https://doi.org/10.1016/j.wroa.2022.100164
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, S., Jeevannavar, A., Julian, T. R., & Tamminen, M. (2023). Portable BLAST-like algorithm library and its implementations for command line, Python, and R. PLoS One, 18(11), e0289693 (5 pp.). https://doi.org/10.1371/journal.pone.0289693
Defining risk-based monitoring frequencies to verify the performance of water treatment barriers
Sylvestre, É., Reynaert, E., & Julian, T. R. (2023). Defining risk-based monitoring frequencies to verify the performance of water treatment barriers. Environmental Science and Technology Letters, 10(4), 374-384. https://doi.org/10.1021/acs.estlett.3c00154
Effects of chronic exposure to arsenic on the fecal carriage of antibiotic-resistant <em>Escherichia coli</em> among people in rural Bangladesh
Amin, M. B., Talukdar, P. K., Asaduzzaman, M., Roy, S., Flatgard, B. M., Islam, M. R., … Islam, M. A. (2022). Effects of chronic exposure to arsenic on the fecal carriage of antibiotic-resistant Escherichia coli among people in rural Bangladesh. PLoS Pathogens, 18(12), e1010952 (23 pp.). https://doi.org/10.1371/journal.ppat.1010952
Identifying the sources of intestinal colonization with extended-spectrum β-lactamase-producing <em>Escherichia</em> <em>coli</em> in healthy infants in the community
Amin, M. B., Hoque, K. I., Roy, S., Saha, S. R., Islam, M. R., Julian, T. R., & Islam, M. A. (2022). Identifying the sources of intestinal colonization with extended-spectrum β-lactamase-producing Escherichia coli in healthy infants in the community. Frontiers in Microbiology, 13, 803043 (12 pp.). https://doi.org/10.3389/fmicb.2022.803043
Inferring transmission fitness advantage of SARS-CoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021
Caduff, L., Dreifuss, D., Schindler, T., Devaux, A. J., Ganesanandamoorthy, P., Kull, A., … Julian, T. R. (2022). Inferring transmission fitness advantage of SARS-CoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021. Eurosurveillance: bulletin européen sur les maladies transmissibles, 27(10), 2100806 (20 pp.). https://doi.org/10.2807/1560-7917.ES.2022.27.10.2100806
Wastewater reveals the spatiotemporal spread of SARS-CoV-2 in the Canton of Ticino (Switzerland) during the onset of the COVID-19 pandemic
Cariti, F., Tuñas Corzon, A., Fernandez-Cassi, X., Ganesanandamoorthy, P., Ort, C., Julian, T. R., & Kohn, T. (2022). Wastewater reveals the spatiotemporal spread of SARS-CoV-2 in the Canton of Ticino (Switzerland) during the onset of the COVID-19 pandemic. ACS ES&T Water, 2(11), 2194-2200. https://doi.org/10.1021/acsestwater.2c00082
Fecal contamination in child play spaces and on child hands are associated with subsequent adverse child developmental outcomes in rural Democratic Republic of the Congo: REDUCE prospective cohort study
George, C. M., Birindwa, A., Beck, S., Julian, T. R., Kuhl, J., Williams, C., … Cirhuza, L. B. (2022). Fecal contamination in child play spaces and on child hands are associated with subsequent adverse child developmental outcomes in rural Democratic Republic of the Congo: REDUCE prospective cohort study. American Journal of Tropical Medicine and Hygiene, 106(4), 1141-1148. https://doi.org/10.4269/ajtmh.21-0706
Wastewater-based estimation of the effective reproductive number of SARS-CoV-2
Huisman, J. S., Scire, J., Caduff, L., Fernandez-Cassi, X., Ganesanandamoorthy, P., Kull, A., … Julian, T. R. (2022). Wastewater-based estimation of the effective reproductive number of SARS-CoV-2. Environmental Health Perspectives, 130(5), 057011 (12 pp.). https://doi.org/10.1289/EHP10050
Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC
Jahn, K., Dreifuss, D., Topolsky, I., Kull, A., Ganesanandamoorthy, P., Fernandez-Cassi, X., … Beerenwinkel, N. (2022). Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC. Nature Microbiology, 7, 1151-1160. https://doi.org/10.1038/s41564-022-01185-x
How wastewater informs COVID-19 policy in Switzerland
Julian, T. R., Fernandez, X., Ort, C., & Kahn, T. (2022). How wastewater informs COVID-19 policy in Switzerland. Water Science Policy (3 pp.). https://doi.org/10.53014/BHET9151
Drinking water chlorination impact on fecal carriage of extended-spectrum beta-lactamase-producing <em>Enterobacteriaceae </em>in Bangladeshi children in a double-blind, cluster-randomized controlled trial
Montealegre, M. C., Greenwood, E. E., Teichmann, L., Nadimpalli, M. L., Caduff, L., Swarthout, J. M., … Julian, T. R. (2022). Drinking water chlorination impact on fecal carriage of extended-spectrum beta-lactamase-producing Enterobacteriaceae in Bangladeshi children in a double-blind, cluster-randomized controlled trial. Environmental Health Perspectives, 130(11), 117702 (3 pp.). https://doi.org/10.1289/EHP11359
Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children
Nadimpalli, M. L., Lanza, V. F., Montealegre, M. C., Sultana, S., Fuhrmeister, E. R., Worby, C. J., … Pickering, A. J. (2022). Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children. Nature Microbiology, 7(5), 620-629. https://doi.org/10.1038/s41564-022-01101-3
Prider: multiplexed primer design using linearly scaling approximation of set coverage
Smolander, N., Julian, T. R., & Tamminen, M. (2022). Prider: multiplexed primer design using linearly scaling approximation of set coverage. BMC Bioinformatics, 23(1), 174 (7 pp.). https://doi.org/10.1186/s12859-022-04710-1
Differentiating between the possibility and probability of SARS-CoV-2 transmission associated with wastewater: empirical evidence is needed to substantiate risk
Ahmed, W., Bibby, K., D'Aoust, P. M., Delatolla, R., Gerba, C. P., Haas, C. N., … Bivins, A. (2021). Differentiating between the possibility and probability of SARS-CoV-2 transmission associated with wastewater: empirical evidence is needed to substantiate risk. FEMS Microbes, 2, xtab007 (4 pp.). https://doi.org/10.1093/femsmc/xtab007