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Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems
Altermatt, F., Little, C. J., Mächler, E., Wang, S., Zhang, X., & Blackman, R. C. (2020). Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems. Oikos. https://doi.org/10.1111/oik.06806
Microbial community shifts in streams receiving treated wastewater effluent
Mansfeldt, C., Deiner, K., Mächler, E., Fenner, K., Eggen, R. I. L., Stamm, C., … Altermatt, F. (2020). Microbial community shifts in streams receiving treated wastewater effluent. Science of the Total Environment, 709, 135727 (12 pp.). https://doi.org/10.1016/j.scitotenv.2019.135727
Environmental DNA for rivers: from degradation processes to diversity analysis and monitoring
Mächler, E. (2020). Environmental DNA for rivers: from degradation processes to diversity analysis and monitoring (Doctoral dissertation). Universität Zürich, Zürich, 272 p.
Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring - the need for calibration experiments
Blackman, R., Mächler, E., Altermatt, F., Arnold, A., Beja, P., Boets, P., … Deiner, K. (2019). Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring - the need for calibration experiments. Metabarcoding and Metagenomics, 3, 49-57. https://doi.org/10.3897/mbmg.3.34735
Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds
Harper, L. R., Buxton, A. S., Rees, H. C., Bruce, K., Brys, R., Halfmaerten, D., … Hänfling, B. (2019). Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds. Hydrobiologia, 826(1), 25-41. https://doi.org/10.1007/s10750-018-3750-5
Assessing different components of diversity across a river network using eDNA
Mächler, E., Little, C. J., Wüthrich, R., Alther, R., Fronhofer, E. A., Gounand, I., … Altermatt, F. (2019). Assessing different components of diversity across a river network using eDNA. Environmental DNA, 1(3), 290-301. https://doi.org/10.1002/edn3.33
Shedding light on eDNA: neither natural levels of UV radiation nor the presence of a filter feeder affect eDNA-based detection of aquatic organisms
Mächler, E., Osathanunkul, M., & Altermatt, F. (2018). Shedding light on eDNA: neither natural levels of UV radiation nor the presence of a filter feeder affect eDNA-based detection of aquatic organisms. PLoS One, 13(4), e0195529 (15 pp.). https://doi.org/10.1371/journal.pone.0195529
Biodiversity increases and decreases ecosystem stability
Pennekamp, F., Pontarp, M., Tabi, A., Altermatt, F., Alther, R., Choffat, Y., … Petchey, O. L. (2018). Biodiversity increases and decreases ecosystem stability. Nature, 563(7729), 109-112. https://doi.org/10.1038/s41586-018-0627-8
Environmental DNA metabarcoding: transforming how we survey animal and plant communities
Deiner, K., Bik, H. M., Mächler, E., Seymour, M., Lacoursière-Roussel, A., Altermatt, F., … Bernatchez, L. (2017). Environmental DNA metabarcoding: transforming how we survey animal and plant communities. Molecular Ecology, 26(21), 5872-5895. https://doi.org/10.1111/mec.14350
Spatial patterns of genetic diversity, community composition and occurrence of native and non-native amphipods in naturally replicated tributary streams
Altermatt, F., Alther, R., & Mächler, E. (2016). Spatial patterns of genetic diversity, community composition and occurrence of native and non-native amphipods in naturally replicated tributary streams. BMC Ecology, 16, 23 (11 pp.). https://doi.org/10.1186/s12898-016-0079-7
Environmental DNA reveals that rivers are conveyer belts of biodiversity information
Deiner, K., Fronhofer, E. A., Mächler, E., Walser, J. C., & Altermatt, F. (2016). Environmental DNA reveals that rivers are conveyer belts of biodiversity information. Nature Communications, 7, 12544 (9 pp.). https://doi.org/10.1038/ncomms12544
DNAqua-Net: developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
Leese, F., Altermatt, F., Bouchez, A., Ekrem, T., Hering, D., Meissner, K., … Zimmermann, J. (2016). DNAqua-Net: developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe. Research Ideas and Outcomes, 2, 1-24. https://doi.org/10.3897/rio.2.e11321
Fishing in the water: effect of sampled water volume on environmental DNA-based detection of macroinvertebrates
Mächler, E., Deiner, K., Spahn, F., & Altermatt, F. (2016). Fishing in the water: effect of sampled water volume on environmental DNA-based detection of macroinvertebrates. Environmental Science and Technology, 50(1), 305-312. https://doi.org/10.1021/acs.est.5b04188
Lessons from the macroinvertebrates: species-genetic diversity correlations highlight important dissimilar relationships
Seymour, M., Seppälä, K., Mächler, E., & Altermatt, F. (2016). Lessons from the macroinvertebrates: species-genetic diversity correlations highlight important dissimilar relationships. Freshwater Biology, 61, 1819-1829. https://doi.org/10.1111/fwb.12816
Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution
Altermatt, F., Fronhofer, E. A., Garnier, A., Giometto, A., Hammes, F., Klecka, J., … Petchey, O. L. (2015). Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution. Methods in Ecology and Evolution, 6(2), 218-231. https://doi.org/10.1111/2041-210X.12312
Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA
Deiner, K., Walser, J. C., Mächler, E., & Altermatt, F. (2015). Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA. Biological Conservation, 183, 53-63. https://doi.org/10.1016/j.biocon.2014.11.018
Diversity and distribution of freshwater amphipod species in Switzerland (Crustacea: Amphipoda)
Altermatt, F., Alther, R., Fišer, C., Jokela, J., Konec, M., Küry, D., … Westram, A. M. (2014). Diversity and distribution of freshwater amphipod species in Switzerland (Crustacea: Amphipoda). PLoS One, 9(10), e110328 (12 pp.). https://doi.org/10.1371/journal.pone.0110328
Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species
Mächler, E., Deiner, K., Steinmann, P., & Altermatt, F. (2014). Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species. Freshwater Science, 33(4), 1174-1183. https://doi.org/10.1086/678128
Interaction of species traits and environmental disturbance predicts invasion success of aquatic microorganisms
Mächler, E., & Altermatt, F. (2012). Interaction of species traits and environmental disturbance predicts invasion success of aquatic microorganisms. PLoS One, 7(9), e45400 (10 pp.). https://doi.org/10.1371/journal.pone.0045400