| Toxicity of sediments in eight urban stormwater management ponds: bioassessment by oligochaete community metrics used in the sediment quality triad
Tixier, G., Rochfort, Q., Grapentine, L., Marsalek, J., Lafont, M., & Vivien, R. (2023). Toxicity of sediments in eight urban stormwater management ponds: bioassessment by oligochaete community metrics used in the sediment quality triad. Water Science and Technology. https://doi.org/10.2166/wst.2023.051 |
| Environmental DNA metabarcoding for benthic monitoring: a review of sediment sampling and DNA extraction methods
Pawlowski, J., Bruce, K., Panksep, K., Aguirre, F. I., Amalfitano, S., Apothéloz-Perret-Gentil, L., … Fazi, S. (2022). Environmental DNA metabarcoding for benthic monitoring: a review of sediment sampling and DNA extraction methods. Science of the Total Environment, 818, 151783 (17 pp.). https://doi.org/10.1016/j.scitotenv.2021.151783 |
| Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Rimet, F., Aylagas, E., Borja, A., Bouchez, A., Canino, A., Chauvin, C., … Ekrem, T. (2021). Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics, 5, 17-33. https://doi.org/10.3897/mbmg.5.58056 |
| Évaluation des effets de l’augmentation des débits réservés à l’aval de deux barrages du Haut-Rhône français à l’aide de l’examen des communautés d’oligochètes
Vivien, R., Jézéquel, C., & Lafont, M. (2021). Évaluation des effets de l’augmentation des débits réservés à l’aval de deux barrages du Haut-Rhône français à l’aide de l’examen des communautés d’oligochètes. Bulletin de la Société Vaudoise des Sciences Naturelles, 100, 103-118. |
| État des sédiments de canaux artificiels
Beauvais, R., Vivien, R., Ferrari, B. J. D., & Casado-Martinez, M. C. (2020). État des sédiments de canaux artificiels. Aqua & Gas, 100(11), 73-81. |
| Évaluation de la qualité des sédiments des canaux Stockalper, du Bras-Neuf et des îles (Valais, Suisse) basée sur une approche de type triade. Rapport externe
Beauvais, R., Vivien, R., Ferrari, B. J. D., & Casado-Martinez, C. (2020). Évaluation de la qualité des sédiments des canaux Stockalper, du Bras-Neuf et des îles (Valais, Suisse) basée sur une approche de type triade. Rapport externe. Centre suisse d’écotoxicologue appliquée. |
| Assessment of abundance and community composition of benthic macroinvertebrates: recommendations for improved sampling, fixation and extraction of oligochaetes
Vivien, R., Lafont, M., & Ferrari, B. J. D. (2020). Assessment of abundance and community composition of benthic macroinvertebrates: recommendations for improved sampling, fixation and extraction of oligochaetes. Archives des Sciences, 71(1), 37-44. |
| Effect thresholds of metals in stream sediments based on in situ oligochaete communities
Vivien, R., Casado-Martínez, C., Lafont, M., & Ferrari, B. J. D. (2020). Effect thresholds of metals in stream sediments based on in situ oligochaete communities. Environments, 7(4), 31 (15 pp.). https://doi.org/10.3390/environments7040031 |
| High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes
Vivien, R., Apothéloz-Perret-Gentil, L., Pawlowski, J., Werner, I., Lafont, M., & Ferrari, B. J. D. (2020). High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes. Scientific Reports, 10, 2041 (8 pp.). https://doi.org/10.1038/s41598-020-58703-2 |
| The foreign oligochaete species <em>Quistadrilus multisetosus</em> (Smith, 1900) in Lake Geneva: morphological and molecular characterization and environmental influences on its distribution
Vivien, R., Lafont, M., Lods-Crozet, B., Holzmann, M., Apothéloz-Perret-Gentil, L., Guigoz, Y., & Ferrari, B. J. D. (2020). The foreign oligochaete species Quistadrilus multisetosus (Smith, 1900) in Lake Geneva: morphological and molecular characterization and environmental influences on its distribution. Biology, 9(12), 436 (17 pp.). https://doi.org/10.3390/biology9120436 |
| Pression chimique et impacts écologiques: distribution des contaminants et réponse des communautés de microorganismes et d'invertébrés dans les sédiments de l’Ardières et du Tillet (CommuSED)
Pesce, S., Lyautey, E., Naffrechoux, E., Ferrari, B., Dabrin, A., Margoum, C., … Bonnineau, C. (2019). Pression chimique et impacts écologiques: distribution des contaminants et réponse des communautés de microorganismes et d'invertébrés dans les sédiments de l’Ardières et du Tillet (CommuSED). Zone Atelier Bassin du Rhône (ZABR). |
| Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques
Pesce, S., Ferrari, B. J. D., Bonnineau, C., Casado, C., Apotheloz-Perret-Gentil, L., Bouchez, A., … Yari, A. (2019). Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques. Sciences Eaux & Territoires, 55, 2-9. https://doi.org/10.14758/set-revue.2019.hs.04 |
| Assessment of the effects of wastewater treatment plant effluents on receiving streams using oligochaete communities of the porous matrix
Vivien, R., Lafont, M., Werner, I., Laluc, M., & Ferrari, B. J. D. (2019). Assessment of the effects of wastewater treatment plant effluents on receiving streams using oligochaete communities of the porous matrix. Knowledge and Management of Aquatic Ecosystems, 265(420), 18 (8 pp.). https://doi.org/10.1051/kmae/2019011 |
| Testing different (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments
Vivien, R., Apothéloz-Perret-Gentil, L., Pawlowski, J., Werner, I., & Ferrari, B. J. D. (2019). Testing different (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments. Ecological Indicators, 106, 105453 (9 pp.). https://doi.org/10.1016/j.ecolind.2019.105453 |
| Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program
Lefrançois, E., Apothéloz-Perret-Gentil, L., Blancher, P., Botreau, S., Chardon, C., Crepin, L., … Bouchez, A. (2018). Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program. Environmental Science and Pollution Research, 25(34), 33858-33866. https://doi.org/10.1007/s11356-018-2172-2 |
| Simultaneous preservation of the DNA quality, the community composition and the density of freshwater oligochaetes for the development of genetically based biological indices
Vivien, R., Werner, I., & Ferrari, B. J. D. (2018). Simultaneous preservation of the DNA quality, the community composition and the density of freshwater oligochaetes for the development of genetically based biological indices. PeerJ, 6, e6050 (12 pp.). https://doi.org/10.7717/peerj.6050 |
| Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference database
Vivien, R., Holzmann, M., Werner, I., Pawlowski, J., Lafont, M., & Ferrari, B. J. D. (2017). Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference database. PeerJ, 5, e4122 (16 pp.). https://doi.org/10.7717/peerj.4122 |
| DNA barcoding of formalin-fixed aquatic oligochaetes for biomonitoring
Vivien, R., Ferrari, B. J. D., & Pawlowski, J. (2016). DNA barcoding of formalin-fixed aquatic oligochaetes for biomonitoring. BMC Research Notes, 9, 342 (4 pp.). https://doi.org/10.1186/s13104-016-2140-1 |
| Next-Generation Sequencing of aquatic oligochaetes: comparison of experimental communities
Vivien, R., Lejzerowicz, F., & Pawlowski, J. (2016). Next-Generation Sequencing of aquatic oligochaetes: comparison of experimental communities. PLoS One, 11(2), e0148644 (14 pp.). https://doi.org/10.1371/journal.pone.0148644 |
| Oligochaeten zeigen Sedimentqualität an
Vivien, R., & Ferrari, B. (2016). Oligochaeten zeigen Sedimentqualität an. Oekotoxzentrum News, 3-5. |