| Generality of associations between biological richness and the rates of metabolic processes across microbial communities
Patsch, D., van Vliet, S., Garbani Marcantini, L., & Johnson, D. R. (2018). Generality of associations between biological richness and the rates of metabolic processes across microbial communities. Environmental Microbiology, 20(12), 4356-4368. https://doi.org/10.1111/1462-2920.14352 |
| A conceptual framework for invasion in microbial communities
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., … Smets, B. F. (2016). A conceptual framework for invasion in microbial communities. ISME Journal, 10, 2773-2779. https://doi.org/10.1038/ismej.2016.75 |
| Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates
Lilja, E. E., & Johnson, D. R. (2016). Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates. ISME Journal, 10, 1568-1578. https://doi.org/10.1038/ismej.2015.243 |
| A framework for establishing predictive relationships between specific bacterial 16S rRNA sequence abundances and biotransformation rates
Helbling, D. E., Johnson, D. R., Lee, T. K., Scheidegger, A., & Fenner, K. (2015). A framework for establishing predictive relationships between specific bacterial 16S rRNA sequence abundances and biotransformation rates. Water Research, 70, 471-484. https://doi.org/10.1016/j.watres.2014.12.013 |
| The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability
Johnson, D. R., Lee, T. K., Park, J., Fenner, K., & Helbling, D. E. (2015). The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability. Environmental Microbiology, 17(12), 4851-4860. https://doi.org/10.1111/1462-2920.12429 |
| Towards community systems microbiology for the optimization of aerobic-anaerobic ammonium oxidation processes
Weissbrodt, D. G., Wells, G. F., Johnson, D. R., Bürgmann, H., Joss, A., Laureni, M., & Morgenroth, E. (2014). Towards community systems microbiology for the optimization of aerobic-anaerobic ammonium oxidation processes. In Vol. 1. 87th annual water environment federation technical exhibition and conference (WEFTEC 2014) (pp. 2645-2649). https://doi.org/10.2175/193864714815942567 |
| Global gene expression of <I>Dehalococcoides</I> within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply
West, K. A., Lee, P. K. H., Johnson, D. R., Zinder, S. H., & Alvarez-Cohen, L. (2013). Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply. Biotechnology and Bioengineering, 110(5), 1333-1341. https://doi.org/10.1002/bit.24819 |
| Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics
Helbling, D. E., Johnson, D. R., Honti, M., & Fenner, K. (2012). Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics. Environmental Science and Technology, 46(19), 10579-10588. https://doi.org/10.1021/es3019012 |
| The activity level of a microbial community function can be predicted from its metatranscriptome
Helbling, D. E., Ackermann, M., Fenner, K., Kohler, H. P. E., & Johnson, D. R. (2012). The activity level of a microbial community function can be predicted from its metatranscriptome. ISME Journal, 6(4), 902-904. https://doi.org/10.1038/ismej.2011.158 |
| Metabolic specialization and the assembly of microbial communities
Johnson, D. R., Goldschmidt, F., Lilja, E. E., & Ackermann, M. (2012). Metabolic specialization and the assembly of microbial communities. ISME Journal, 6(11), 1985-1991. https://doi.org/10.1038/ismej.2012.46 |