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The role of the microbial communities in the nitrogen cycle of freshwater lakes
Saribekyan-Baumann, K. B. L. (2022). The role of the microbial communities in the nitrogen cycle of freshwater lakes [Doctoral dissertation]. ETH Zurich.
Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake
Zimmermann, M., Mayr, M. J., Bouffard, D., Wehrli, B., & Bürgmann, H. (2022). Trait-based model reproduces patterns of population structure and diversity of methane oxidizing bacteria in a stratified lake. Frontiers in Environmental Science, 10, 833511 (15 pp.). https://doi.org/10.3389/fenvs.2022.833511
Linking seasonal N<sub>2</sub>O emissions and nitrification failures to microbial dynamics in a SBR wastewater treatment plant
Gruber, W., Niederdorfer, R., Ringwald, J., Morgenroth, E., Bürgmann, H., & Joss, A. (2021). Linking seasonal N2O emissions and nitrification failures to microbial dynamics in a SBR wastewater treatment plant. Water Research X, 11, 100098 (13 pp.). https://doi.org/10.1016/j.wroa.2021.100098
Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective
Lee, J. (2021). Tracking anthropogenic footprints of antimicrobial resistance in the river system: a Swiss perspective [Doctoral dissertation, ETH Zurich]. https://doi.org/10.3929/ethz-b-000514663
Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs
Lee, J., Ju, F., Maile-Moskowitz, A., Beck, K., Maccagnan, A., McArdell, C. S., … Bürgmann, H. (2021). Unraveling the riverine antibiotic resistome: the downstream fate of anthropogenic inputs. Water Research, 197, 117050 (12 pp.). https://doi.org/10.1016/j.watres.2021.117050
Nitrogen isotope effects can be used to diagnose N transformations in wastewater anammox systems
Magyar, P. M., Hausherr, D., Niederdorfer, R., Stöcklin, N., Wei, J., Mohn, J., … Lehmann, M. F. (2021). Nitrogen isotope effects can be used to diagnose N transformations in wastewater anammox systems. Scientific Reports, 11(1), 7850 (12 pp.). https://doi.org/10.1038/s41598-021-87184-0
Distinct growth stages controlled by the interplay of deterministic and stochastic processes in functional anammox biofilms
Niederdorfer, R., Fragner, L., Yuan, L., Hausherr, D., Wei, J., Magyar, P., … Bürgmann, H. (2021). Distinct growth stages controlled by the interplay of deterministic and stochastic processes in functional anammox biofilms. Water Research, 200, 117225 (14 pp.). https://doi.org/10.1016/j.watres.2021.117225
Temperature modulates stress response in mainstream anammox reactors
Niederdorfer, R., Hausherr, D., Palomo, A., Wei, J., Magyar, P., Smets, B. F., … Bürgmann, H. (2021). Temperature modulates stress response in mainstream anammox reactors. Communications Biology, 4(1), 23 (12 pp.). https://doi.org/10.1038/s42003-020-01534-8
Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants
Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J., Smets, B. F., … Ju, F. (2021). Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic-resistant players in wastewater treatment plants. Environmental Science and Technology, 55(15), 10862-10874. https://doi.org/10.1021/acs.est.1c02483
Microbial methane oxidation efficiency and robustness during lake overturn
Zimmermann, M., Mayr, M. J., Bürgmann, H., Eugster, W., Steinsberger, T., Wehrli, B., … Bouffard, D. (2021). Microbial methane oxidation efficiency and robustness during lake overturn. Limnology and Oceanography Letters, 6(6), 320-328. https://doi.org/10.1002/lol2.10209
Every fifth published metagenome is not available to science
Eckert, E. M., Di Cesare, A., Fontaneto, D., Berendonk, T. U., Bürgmann, H., Cytryn, E., … Corno, G. (2020). Every fifth published metagenome is not available to science. PLoS Biology, 18(4), e3000698 (7 pp.). https://doi.org/10.1371/journal.pbio.3000698
Environmental and microbial interactions shape methane-oxidizing bacterial communities in a stratified lake
Guggenheim, C., Freimann, R., Mayr, M. J., Beck, K., Wehrli, B., & Bürgmann, H. (2020). Environmental and microbial interactions shape methane-oxidizing bacterial communities in a stratified lake. Frontiers in Microbiology, 11, 579427 (16 pp.). https://doi.org/10.3389/fmicb.2020.579427
A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants
Marano, R. B. M., Fernandes, T., Manaia, C. M., Nunes, O., Morrison, D., Berendonk, T. U., … Cytryn, E. (2020). A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants. Environment International, 144, 106035 (11 pp.). https://doi.org/10.1016/j.envint.2020.106035
Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn
Mayr, M. J., Zimmermann, M., Dey, J., Brand, A., Wehrli, B., & Bürgmann, H. (2020). Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn. Communications Biology, 3, 108 (9 pp.). https://doi.org/10.1038/s42003-020-0838-z
Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage
Mayr, M. J., Zimmermann, M., Dey, J., Wehrli, B., & Bürgmann, H. (2020). Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage. Biogeosciences, 17(16), 4247-4259. https://doi.org/10.5194/bg-17-4247-2020
Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
Mayr, M. J., Zimmermann, M., Guggenheim, C., Brand, A., & Bürgmann, H. (2020). Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes. ISME Journal, 14, 274-287. https://doi.org/10.1038/s41396-019-0515-8
Aerobic methane oxidation under copper scarcity in a stratified lake
Guggenheim, C., Brand, A., Bürgmann, H., Sigg, L., & Wehrli, B. (2019). Aerobic methane oxidation under copper scarcity in a stratified lake. Scientific Reports, 9, 4817 (11 pp.). https://doi.org/10.1038/s41598-019-40642-2
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
Ju, F., Beck, K., Yin, X., Maccagnan, A., McArdell, C. S., Singer, H. P., … Bürgmann, H. (2019). Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. ISME Journal, 13(2), 346-360. https://doi.org/10.1038/s41396-018-0277-8
Predator-induced changes in dissolved organic carbon dynamics
Limberger, R., Birtel, J., Peter, H., Catalán, N., da Silva Farias, D., Best, R. J., … Matthews, B. (2019). Predator-induced changes in dissolved organic carbon dynamics. Oikos, 128(3), 430-440. https://doi.org/10.1111/oik.05673
New insight into effect of antibiotics concentration and process configuration on the removal of antibiotics and relevant antibiotic resistance genes
Yang, L., Wen, Q., Zhao, Y., Chen, Z., Wang, Q., & Bürgmann, H. (2019). New insight into effect of antibiotics concentration and process configuration on the removal of antibiotics and relevant antibiotic resistance genes. Journal of Hazardous Materials, 373, 60-66. https://doi.org/10.1016/j.jhazmat.2019.03.060