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Host-associated bacterial communities vary between <em>Daphnia galeata</em> genotypes but not by host genetic distance
Rajarajan, A., Wolinska, J., Walser, J. C., Dennis, S. R., & Spaak, P. (2023). Host-associated bacterial communities vary between Daphnia galeata genotypes but not by host genetic distance. Microbial Ecology, 85(4), 1578-1589. https://doi.org/10.1007/s00248-022-02011-x
Ancient and modern geochemical signatures in the 13,500-year sedimentary record of Lake Cadagno
Berg, J. S., Lepine, M., Laymand, E., Han, X., Vogel, H., Morlock, M. A., … Lever, M. A. (2022). Ancient and modern geochemical signatures in the 13,500-year sedimentary record of Lake Cadagno. Frontiers in Earth Science, 9, 754888 (16 pp.). https://doi.org/10.3389/feart.2021.754888
Automated flow cytometry as a flexible tool for comparing disinfection characteristics of indigenous bacterial communities and pure cultures
Mao, G., Wang, Y., & Hammes, F. (2021). Automated flow cytometry as a flexible tool for comparing disinfection characteristics of indigenous bacterial communities and pure cultures. Ecotoxicology and Environmental Safety, 225, 112799 (8 pp.). https://doi.org/10.1016/j.ecoenv.2021.112799
Soil Hg contamination impact on earthworms&#039; gut microbiome
Brantschen, J., Gygax, S., Mestrot, A., & Frossard, A. (2020). Soil Hg contamination impact on earthworms' gut microbiome. Applied Sciences, 10(7), 2565 (19 pp.). https://doi.org/10.3390/app10072565
Biotreatment of drinking water
Hammes, F., Velten, S., Egli, T., & Juhna, T. (2019). Biotreatment of drinking water. In M. Y. Murray (Ed.), Comprehensive biotechnology: Vol. 6. Environmental and related biotechnologies (pp. 463-476). https://doi.org/10.1016/B978-0-444-64046-8.00374-8
Predator-induced changes in dissolved organic carbon dynamics
Limberger, R., Birtel, J., Peter, H., Catalán, N., da Silva Farias, D., Best, R. J., … Matthews, B. (2019). Predator-induced changes in dissolved organic carbon dynamics. Oikos, 128(3), 430-440. https://doi.org/10.1111/oik.05673
Individual- versus group-optimality in the production of secreted bacterial compounds
Schiessl, K., Ross-Gillespie, A., Cornforth, D. M., Weigert, M., Bigosch, C., Brown, S. P., … Kümmerli, R. (2019). Individual- versus group-optimality in the production of secreted bacterial compounds. Evolution, International Journal of Organic Evolution, 73(4), 675-688. https://doi.org/10.1111/evo.13701
Intransitive competition is common across five major taxonomic groups and is driven by productivity, competitive rank and functional traits
Soliveres, S., Lehmann, A., Boch, S., Altermatt, F., Carrara, F., Crowther, T. W., … Allan, E. (2018). Intransitive competition is common across five major taxonomic groups and is driven by productivity, competitive rank and functional traits. Journal of Ecology, 106(3), 852-864. https://doi.org/10.1111/1365-2745.12959
Day–night ammonium oxidation in an urban stream: the influence of irradiance on ammonia oxidizers
Bernal, S., Merbt, S. N., Ribot, M., Casamayor, E. O., & Martí, E. (2017). Day–night ammonium oxidation in an urban stream: the influence of irradiance on ammonia oxidizers. Freshwater Science, 36(2), 272-283. https://doi.org/10.1086/691797
Ecosystem flux and biotic modification as drivers of metaecosystem dynamics
Limberger, R., Birtel, J., Farias, D. D. S., & Matthews, B. (2017). Ecosystem flux and biotic modification as drivers of metaecosystem dynamics. Ecology, 98(4), 1082-1092. https://doi.org/10.1002/ecy.1742
Grazers structure the bacterial and algal diversity of aquatic metacommunities
Birtel, J., & Matthews, B. (2016). Grazers structure the bacterial and algal diversity of aquatic metacommunities. Ecology, 97(12), 3472-3484. https://doi.org/10.1002/ecy.1612
Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis
Gounand, I., Daufresne, T., Gravel, D., Bouvier, C., Bouvier, T., Combe, M., … Mouquet, N. (2016). Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis. Proceedings of the Royal Society B: Biological Sciences, 283(1845), 20162272 (8 pp.). https://doi.org/10.1098/rspb.2016.2272
Terrestrial runoff boosts phytoplankton in a Mediterranean coastal lagoon, but these effects do not propagate to higher trophic levels
Liess, A., Rowe, O., Francoeur, S. N., Guo, J., Lange, K., Schröder, A., … Faithfull, C. L. (2016). Terrestrial runoff boosts phytoplankton in a Mediterranean coastal lagoon, but these effects do not propagate to higher trophic levels. Hydrobiologia, 766(1), 275-291. https://doi.org/10.1007/s10750-015-2461-4
A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining
Nescerecka, A., Hammes, F., & Juhna, T. (2016). A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining. Journal of Microbiological Methods, 131, 172-180. https://doi.org/10.1016/j.mimet.2016.10.022
Does human activity impact the natural antibiotic resistance background? Abundance of antibiotic resistance genes in 21 Swiss lakes
Czekalski, N., Sigdel, R., Birtel, J., Matthews, B., & Bürgmann, H. (2015). Does human activity impact the natural antibiotic resistance background? Abundance of antibiotic resistance genes in 21 Swiss lakes. Environment International, 81, 45-55. https://doi.org/10.1016/j.envint.2015.04.005
The feasibility of automated online flow cytometry for <em>in-situ</em> monitoring of microbial dynamics in aquatic ecosystems
Besmer, M. D., Weissbrodt, D. G., Kratochvil, B. E., Sigrist, J. A., Weyland, M. S., & Hammes, F. (2014). The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems. Frontiers in Microbiology, 5, 265 (12 pp.). https://doi.org/10.3389/fmicb.2014.00265
Microbiological tap water profile of a medium-sized building and effect of water stagnation
Lipphaus, P., Hammes, F., Kötzsch, S., Green, J., Gillespie, S., & Nocker, A. (2014). Microbiological tap water profile of a medium-sized building and effect of water stagnation. Environmental Technology, 35(5), 620-628. https://doi.org/10.1080/09593330.2013.839748
Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses
Declerck, S. A. J., Winter, C., Shurin, J. B., Suttle, C. A., & Matthews, B. (2013). Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses. ISME Journal, 7(3), 533-542. https://doi.org/10.1038/ismej.2012.138
T-RFLP fingerprinting analysis of bacterial communities in debris cones, Northern Victoria Land, Antarctica
Abramovich, R. S., Pomati, F., Jungblut, A. D., Guglielmin, M., & Neilan, B. A. (2012). T-RFLP fingerprinting analysis of bacterial communities in debris cones, Northern Victoria Land, Antarctica. Permafrost and Periglacial Processes, 23(3), 244-248. https://doi.org/10.1002/ppp.1749
Development and laboratory-scale testing of a fully automated online flow cytometer for drinking water analysis
Hammes, F., Broger, T., Weilenmann, H. U., Vital, M., Helbing, J., Bosshart, U., … Sonnleitner, B. (2012). Development and laboratory-scale testing of a fully automated online flow cytometer for drinking water analysis. Cytometry Part A, 81A(6), 508-516. https://doi.org/10.1002/cyto.a.22048