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Changes in interactions over ecological time scales influence single-cell growth dynamics in a metabolically coupled marine microbial community
Daniels, M., van Vliet, S., & Ackermann, M. (2023). Changes in interactions over ecological time scales influence single-cell growth dynamics in a metabolically coupled marine microbial community. ISME Journal, 17(3), 406-416. https://doi.org/10.1038/s41396-022-01312-w
Cell aggregation is associated with enzyme secretion strategies in marine polysaccharide-degrading bacteria
D’Souza, G., Ebrahimi, A., Stubbusch, A., Daniels, M., Keegstra, J., Stocker, R., … Ackermann, M. (2023). Cell aggregation is associated with enzyme secretion strategies in marine polysaccharide-degrading bacteria. ISME Journal, 17, 703-711. https://doi.org/10.1038/s41396-023-01385-1
Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria
Ge, Z. B., Zhai, Z. Q., Xie, W. Y., Dai, J., Huang, K., Johnson, D. R., … Wang, P. (2023). Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria. ISME Journal, 17, 2090-2102. https://doi.org/10.1038/s41396-023-01519-5
Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats
Lee, J., Ju, F., Beck, K., & Bürgmann, H. (2023). Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats. ISME Journal, 17, 1993-2002. https://doi.org/10.1038/s41396-023-01506-w
Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment
Ciccarese, D., Micali, G., Borer, B., Ruan, C., Or, D., & Johnson, D. R. (2022). Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment. ISME Journal, 16, 1453-1463. https://doi.org/10.1038/s41396-022-01189-9
Microbial storage and its implications for soil ecology
Mason-Jones, K., Robinson, S. L., Veen, G. F. (C. ), Manzoni, S., & van der Putten, W. H. (2022). Microbial storage and its implications for soil ecology. ISME Journal, 16, 617-629. https://doi.org/10.1038/s41396-021-01110-w
Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo
Benz, F., Huisman, J. S., Bakkeren, E., Herter, J. A., Stadler, T., Ackermann, M., … Bonhoeffer, S. (2021). Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. ISME Journal, 15, 862-878. https://doi.org/10.1038/s41396-020-00819-4
Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations
D’Souza, G. G., Povolo, V. R., Keegstra, J. M., Stocker, R., & Ackermann, M. (2021). Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations. ISME Journal, 15, 2614-2626. https://doi.org/10.1038/s41396-021-00953-7
Causes and consequences of pattern diversification in a spatially self-organizing microbial community
Goldschmidt, F., Caduff, L., & Johnson, D. R. (2021). Causes and consequences of pattern diversification in a spatially self-organizing microbial community. ISME Journal, 15(8), 2415-2426. https://doi.org/10.1038/s41396-021-00942-w
Rapid evolution destabilizes species interactions in a fluctuating environment
Rodríguez-Verdugo, A., & Ackermann, M. (2021). Rapid evolution destabilizes species interactions in a fluctuating environment. ISME Journal, 15, 450-460. https://doi.org/10.1038/s41396-020-00787-9
Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
Mayr, M. J., Zimmermann, M., Guggenheim, C., Brand, A., & Bürgmann, H. (2020). Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes. ISME Journal, 14, 274-287. https://doi.org/10.1038/s41396-019-0515-8
Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world
Wang, S., Zhu, G., Zhuang, L., Li, Y., Liu, L., Lavik, G., … Yin, C. (2020). Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world. ISME Journal, 14, 151-163. https://doi.org/10.1038/s41396-019-0513-x
Light limitation increases multidimensional trait evenness in phytoplankton populations
Fontana, S., Thomas, M. K., Reyes, M., & Pomati, F. (2019). Light limitation increases multidimensional trait evenness in phytoplankton populations. ISME Journal, 13, 1159-1167. https://doi.org/10.1038/s41396-018-0320-9
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
Ju, F., Beck, K., Yin, X., Maccagnan, A., McArdell, C. S., Singer, H. P., … Bürgmann, H. (2019). Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. ISME Journal, 13(2), 346-360. https://doi.org/10.1038/s41396-018-0277-8
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
Mansfeldt, C., Achermann, S., Men, Y., Walser, J. C., Villez, K., Joss, A., … Fenner, K. (2019). Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. ISME Journal, 13(6), 1589-1601. https://doi.org/10.1038/s41396-019-0371-6
Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness
Fontana, S., Thomas, M. K., Moldoveanu, M., Spaak, P., & Pomati, F. (2018). Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness. ISME Journal, 12, 356-366. https://doi.org/10.1038/ismej.2017.160
Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community
Goldschmidt, F., Regoes, R. R., & Johnson, D. R. (2018). Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community. ISME Journal, 12(1), 136-144. https://doi.org/10.1038/ismej.2017.147
Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems
Proctor, C. R., Besmer, M. D., Langenegger, T., Beck, K., Walser, J. C., Ackermann, M., … Hammes, F. (2018). Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems. ISME Journal, 12, 1344-1359. https://doi.org/10.1038/s41396-018-0070-8
Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations
Goldschmidt, F., Regoes, R. R., & Johnson, D. R. (2017). Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations. ISME Journal, 11(9), 2112-2123. https://doi.org/10.1038/ismej.2017.76
Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen-limited <em>Chlamydomonas</em>
Krismer, J., Tamminen, M., Fontana, S., Zenobi, R., & Narwani, A. (2017). Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen-limited Chlamydomonas. ISME Journal, 11(4), 988-998. https://doi.org/10.1038/ismej.2016.167