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Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment
Ciccarese, D., Micali, G., Borer, B., Ruan, C., Or, D., & Johnson, D. R. (2022). Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment. ISME Journal. https://doi.org/10.1038/s41396-022-01189-9
Microbial storage and its implications for soil ecology
Mason-Jones, K., Robinson, S. L., Veen, G. F. (C. ), Manzoni, S., & van der Putten, W. H. (2022). Microbial storage and its implications for soil ecology. ISME Journal, 16, 617-629. https://doi.org/10.1038/s41396-021-01110-w
Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo
Benz, F., Huisman, J. S., Bakkeren, E., Herter, J. A., Stadler, T., Ackermann, M., … Bonhoeffer, S. (2021). Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. ISME Journal, 15, 862-878. https://doi.org/10.1038/s41396-020-00819-4
Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations
D’Souza, G. G., Povolo, V. R., Keegstra, J. M., Stocker, R., & Ackermann, M. (2021). Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations. ISME Journal, 15, 2614-2626. https://doi.org/10.1038/s41396-021-00953-7
Causes and consequences of pattern diversification in a spatially self-organizing microbial community
Goldschmidt, F., Caduff, L., & Johnson, D. R. (2021). Causes and consequences of pattern diversification in a spatially self-organizing microbial community. ISME Journal, 15(8), 2415-2426. https://doi.org/10.1038/s41396-021-00942-w
Rapid evolution destabilizes species interactions in a fluctuating environment
Rodríguez-Verdugo, A., & Ackermann, M. (2021). Rapid evolution destabilizes species interactions in a fluctuating environment. ISME Journal, 15, 450-460. https://doi.org/10.1038/s41396-020-00787-9
Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes
Mayr, M. J., Zimmermann, M., Guggenheim, C., Brand, A., & Bürgmann, H. (2020). Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes. ISME Journal, 14, 274-287. https://doi.org/10.1038/s41396-019-0515-8
Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world
Wang, S., Zhu, G., Zhuang, L., Li, Y., Liu, L., Lavik, G., … Yin, C. (2020). Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world. ISME Journal, 14, 151-163. https://doi.org/10.1038/s41396-019-0513-x
Light limitation increases multidimensional trait evenness in phytoplankton populations
Fontana, S., Thomas, M. K., Reyes, M., & Pomati, F. (2019). Light limitation increases multidimensional trait evenness in phytoplankton populations. ISME Journal, 13, 1159-1167. https://doi.org/10.1038/s41396-018-0320-9
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
Ju, F., Beck, K., Yin, X., Maccagnan, A., McArdell, C. S., Singer, H. P., … Bürgmann, H. (2019). Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes. ISME Journal, 13(2), 346-360. https://doi.org/10.1038/s41396-018-0277-8
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
Mansfeldt, C., Achermann, S., Men, Y., Walser, J. C., Villez, K., Joss, A., … Fenner, K. (2019). Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities. ISME Journal, 13(6), 1589-1601. https://doi.org/10.1038/s41396-019-0371-6
Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness
Fontana, S., Thomas, M. K., Moldoveanu, M., Spaak, P., & Pomati, F. (2018). Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness. ISME Journal, 12, 356-366. https://doi.org/10.1038/ismej.2017.160
Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community
Goldschmidt, F., Regoes, R. R., & Johnson, D. R. (2018). Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community. ISME Journal, 12(1), 136-144. https://doi.org/10.1038/ismej.2017.147
Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems
Proctor, C. R., Besmer, M. D., Langenegger, T., Beck, K., Walser, J. C., Ackermann, M., … Hammes, F. (2018). Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems. ISME Journal, 12, 1344-1359. https://doi.org/10.1038/s41396-018-0070-8
Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations
Goldschmidt, F., Regoes, R. R., & Johnson, D. R. (2017). Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations. ISME Journal, 11(9), 2112-2123. https://doi.org/10.1038/ismej.2017.76
Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen-limited <em>Chlamydomonas</em>
Krismer, J., Tamminen, M., Fontana, S., Zenobi, R., & Narwani, A. (2017). Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen-limited Chlamydomonas. ISME Journal, 11(4), 988-998. https://doi.org/10.1038/ismej.2016.167
<i>Crenothrix</i> are major methane consumers in stratified lakes
Oswald, K., Graf, J. S., Littmann, S., Tienken, D., Brand, A., Wehrli, B., … Milucka, J. (2017). Crenothrix are major methane consumers in stratified lakes. ISME Journal, 11, 2124-2140. https://doi.org/10.1038/ismej.2017.77
Absolute quantification of microbial taxon abundances
Props, R., Kerckhof, F. M., Rubbens, P., De Vrieze, J., Hernandez Sanabria, E., Waegeman, W., … Boon, N. (2017). Absolute quantification of microbial taxon abundances. ISME Journal, 11(587), 584-587. https://doi.org/10.1038/ismej.2016.117
Protistan community analysis: key findings of a large-scale molecular sampling
Grossmann, L., Jensen, M., Heider, D., Jost, S., Glücksman, E., Hartikainen, H., … Boenigk, J. (2016). Protistan community analysis: key findings of a large-scale molecular sampling. ISME Journal, 10, 2269-2279. https://doi.org/10.1038/ismej.2016.10
A conceptual framework for invasion in microbial communities
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., … Smets, B. F. (2016). A conceptual framework for invasion in microbial communities. ISME Journal, 10, 2773-2779. https://doi.org/10.1038/ismej.2016.75