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Gene co-expression patterns in Atlantic salmon adipose tissue provide a molecular link among seasonal changes, energy balance and age at maturity
Ahi, E. P., Verta, J. P., Kurko, J., Ruokolainen, A., Singh, P., Debes, P. V., … Primmer, C. R. (2024). Gene co-expression patterns in Atlantic salmon adipose tissue provide a molecular link among seasonal changes, energy balance and age at maturity. Molecular Ecology. https://doi.org/10.1111/mec.17313
Genome-wide phylogeography reveals cryptic speciation in the circumglobal planktonic calcifier <em>Limacina bulimoides</em>
Choo, L. Q., Spagliardi, G., Malinsky, M., Choquet, M., Goetze, E., Hoarau, G., & Peijnenburg, K. T. C. A. (2023). Genome-wide phylogeography reveals cryptic speciation in the circumglobal planktonic calcifier Limacina bulimoides. Molecular Ecology, 32(12), 3200-3219. https://doi.org/10.1111/mec.16931
Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land-use and geology
Couton, M., Hürlemann, S., Studer, A., Alther, R., & Altermatt, F. (2023). Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land-use and geology. Molecular Ecology, 32(13), 3497-3512. https://doi.org/10.1111/mec.16955
Introgression from extinct species facilitates adaptation to its vacated niche
Frei, D., Reichlin, P., Seehausen, O., & Feulner, P. G. D. (2023). Introgression from extinct species facilitates adaptation to its vacated niche. Molecular Ecology, 32(4), 841-853. https://doi.org/10.1111/mec.16791
Defensive symbiosis in the wild: seasonal dynamics of parasitism risk and symbiont‐conferred resistance
Gimmi, E., Wallisch, J., & Vorburger, C. (2023). Defensive symbiosis in the wild: seasonal dynamics of parasitism risk and symbiont‐conferred resistance. Molecular Ecology, 32(14), 4063-4077. https://doi.org/10.1111/mec.16976
A combination of machine-learning and eDNA reveals the genetic signature of environmental change at the landscape levels
Keck, F., Brantschen, J., & Altermatt, F. (2023). A combination of machine-learning and eDNA reveals the genetic signature of environmental change at the landscape levels. Molecular Ecology, 32(17), 4791-4800. https://doi.org/10.1111/mec.17073
Demographic fluctuations and selection during host–parasite co-evolution interactively increase genetic diversity
Le Pennec, G., Retel, C., Kowallik, V., Becks, L., & Feulner, P. G. D. (2023). Demographic fluctuations and selection during host–parasite co-evolution interactively increase genetic diversity. Molecular Ecology. https://doi.org/10.1111/mec.16939
Ancient DNA is preserved in fish fossils from tropical lake sediments
Muschick, M., Jemmi, E., Lengacher, N., Hänsch, S., Wales, N., Kishe, M. A., … Seehausen, O. (2023). Ancient DNA is preserved in fish fossils from tropical lake sediments. Molecular Ecology, 32(22), 5913-5931. https://doi.org/10.1111/mec.17159
Genomic basis of Y-linked dwarfism in cichlids pursuing alternative reproductive tactics
Singh, P., Taborsky, M., Peichel, C. L., & Sturmbauer, C. (2023). Genomic basis of Y-linked dwarfism in cichlids pursuing alternative reproductive tactics. Molecular Ecology, 32(7), 1592-1607. https://doi.org/10.1111/mec.16839
Long-wavelength-sensitive (<em>lws</em>) opsin gene expression, foraging and visual communication in coral reef fishes
Stieb, S. M., Cortesi, F., Jardim de Queiroz, L., Carleton, K. L., Seehausen, O., & Marshall, N. J. (2023). Long-wavelength-sensitive (lws) opsin gene expression, foraging and visual communication in coral reef fishes. Molecular Ecology, 32(7), 1656-1672. https://doi.org/10.1111/mec.16831
Genome-phenotype-environment associations identify signatures of selection in a panmictic population of threespine stickleback
Strickland, K., Räsänen, K., Kristjánsson, B. K., Phillips, J. S., Einarsson, A., Snorradóttir, R. G., … Jónsson, Z. O. (2023). Genome-phenotype-environment associations identify signatures of selection in a panmictic population of threespine stickleback. Molecular Ecology, 32(7), 1708-1725. https://doi.org/10.1111/mec.16845
Phylogeography and cryptic species structure of a locally adapted parasite in New Zealand
Feijen, F., Zajac, N., Vorburger, C., Blasco-Costa, I., & Jokela, J. (2022). Phylogeography and cryptic species structure of a locally adapted parasite in New Zealand. Molecular Ecology, 31(15), 4112-4126. https://doi.org/10.1111/mec.16570
Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
Keck, F., Blackman, R. C., Bossart, R., Brantschen, J., Couton, M., Hürlemann, S., … Altermatt, F. (2022). Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology, 31(6), 1820-1835. https://doi.org/10.1111/mec.16364
The importance of alternative splicing in adaptive evolution
Singh, P., & Pashay Ahi, E. (2022). The importance of alternative splicing in adaptive evolution. Molecular Ecology, 31(7), 1928-1938. https://doi.org/10.1111/mec.16377
Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes
Stritt, C., Gimmi, E. L., Wyler, M., Bakali, A. H., Skalska, A., Hasterok, R., … Roulin, A. C. (2022). Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1), 70-85. https://doi.org/10.1111/mec.16207
Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations
Alther, R., Fronhofer, E. A., & Altermatt, F. (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30, 6551-6565. https://doi.org/10.1111/mec.16201
Assessing the impact of the threatened crucian carp (<em>Carassius carassius</em>) on pond invertebrate diversity: A comparison of conventional and molecular tools
Harper, L. R., Lawson Handley, L., Sayer, C. D., Read, D. S., Benucci, M., Blackman, R. C., … Hänfling, B. (2021). Assessing the impact of the threatened crucian carp (Carassius carassius) on pond invertebrate diversity: A comparison of conventional and molecular tools. Molecular Ecology, 30, 3252-3269. https://doi.org/10.1111/mec.15670
Decision-making and best practices for taxonomy-free environmental DNA metabarcoding in biomonitoring using Hill numbers
Mächler, E., Walser, J. C., & Altermatt, F. (2021). Decision-making and best practices for taxonomy-free environmental DNA metabarcoding in biomonitoring using Hill numbers. Molecular Ecology, 30(13), 3326-3339. https://doi.org/10.1111/mec.15725
Environmental versus extra-organismal DNA
Pawlowski, J., Apothéloz-Perret-Gentil, L., & Altermatt, F. (2021). Environmental versus extra-organismal DNA. Molecular Ecology, 30(19), 4606-4607. https://doi.org/10.1111/mec.16144
Resurrecting the metabolome: rapid evolution magnifies the metabolomic plasticity to predation in a natural <em>Daphnia</em> population
Zhang, C., Jones, M., Govaert, L., Viant, M., De Meester, L., & Stoks, R. (2021). Resurrecting the metabolome: rapid evolution magnifies the metabolomic plasticity to predation in a natural Daphnia population. Molecular Ecology, 30(10), 2285-2297. https://doi.org/10.1111/mec.15886