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Predator-induced changes in dissolved organic carbon dynamics
Limberger, R., Birtel, J., Peter, H., Catalán, N., da Silva Farias, D., Best, R. J., … Matthews, B. (2019). Predator-induced changes in dissolved organic carbon dynamics. Oikos, 128(3), 430-440. https://doi.org/10.1111/oik.05673
Individual- versus group-optimality in the production of secreted bacterial compounds
Schiessl, K., Ross-Gillespie, A., Cornforth, D. M., Weigert, M., Bigosch, C., Brown, S. P., … Kümmerli, R. (2019). Individual- versus group-optimality in the production of secreted bacterial compounds. Evolution, International Journal of Organic Evolution, 73(4), 675-688. https://doi.org/10.1111/evo.13701
Intransitive competition is common across five major taxonomic groups and is driven by productivity, competitive rank and functional traits
Soliveres, S., Lehmann, A., Boch, S., Altermatt, F., Carrara, F., Crowther, T. W., … Allan, E. (2018). Intransitive competition is common across five major taxonomic groups and is driven by productivity, competitive rank and functional traits. Journal of Ecology, 106(3), 852-864. https://doi.org/10.1111/1365-2745.12959
Day–night ammonium oxidation in an urban stream: the influence of irradiance on ammonia oxidizers
Bernal, S., Merbt, S. N., Ribot, M., Casamayor, E. O., & Martí, E. (2017). Day–night ammonium oxidation in an urban stream: the influence of irradiance on ammonia oxidizers. Freshwater Science, 36(2), 272-283. https://doi.org/10.1086/691797
Ecosystem flux and biotic modification as drivers of metaecosystem dynamics
Limberger, R., Birtel, J., Farias, D. D. S., & Matthews, B. (2017). Ecosystem flux and biotic modification as drivers of metaecosystem dynamics. Ecology, 98(4), 1082-1092. https://doi.org/10.1002/ecy.1742
Grazers structure the bacterial and algal diversity of aquatic metacommunities
Birtel, J., & Matthews, B. (2016). Grazers structure the bacterial and algal diversity of aquatic metacommunities. Ecology, 97(12), 3472-3484. https://doi.org/10.1002/ecy.1612
Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis
Gounand, I., Daufresne, T., Gravel, D., Bouvier, C., Bouvier, T., Combe, M., … Mouquet, N. (2016). Size evolution in microorganisms masks trade-offs predicted by the growth rate hypothesis. Proceedings of the Royal Society B: Biological Sciences, 283(1845), 20162272 (8 pp.). https://doi.org/10.1098/rspb.2016.2272
Terrestrial runoff boosts phytoplankton in a Mediterranean coastal lagoon, but these effects do not propagate to higher trophic levels
Liess, A., Rowe, O., Francoeur, S. N., Guo, J., Lange, K., Schröder, A., … Faithfull, C. L. (2016). Terrestrial runoff boosts phytoplankton in a Mediterranean coastal lagoon, but these effects do not propagate to higher trophic levels. Hydrobiologia, 766(1), 275-291. https://doi.org/10.1007/s10750-015-2461-4
A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining
Nescerecka, A., Hammes, F., & Juhna, T. (2016). A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining. Journal of Microbiological Methods, 131, 172-180. https://doi.org/10.1016/j.mimet.2016.10.022
Does human activity impact the natural antibiotic resistance background? Abundance of antibiotic resistance genes in 21 Swiss lakes
Czekalski, N., Sigdel, R., Birtel, J., Matthews, B., & Bürgmann, H. (2015). Does human activity impact the natural antibiotic resistance background? Abundance of antibiotic resistance genes in 21 Swiss lakes. Environment International, 81, 45-55. https://doi.org/10.1016/j.envint.2015.04.005
The feasibility of automated online flow cytometry for <I>in-situ</I> monitoring of microbial dynamics in aquatic ecosystems
Besmer, M. D., Weissbrodt, D. G., Kratochvil, B. E., Sigrist, J. A., Weyland, M. S., & Hammes, F. (2014). The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems. Frontiers in Microbiology, 5, 265 (12 pp.). https://doi.org/10.3389/fmicb.2014.00265
Microbiological tap water profile of a medium-sized building and effect of water stagnation
Lipphaus, P., Hammes, F., Kötzsch, S., Green, J., Gillespie, S., & Nocker, A. (2014). Microbiological tap water profile of a medium-sized building and effect of water stagnation. Environmental Technology, 35(5), 620-628. https://doi.org/10.1080/09593330.2013.839748
Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses
Declerck, S. A. J., Winter, C., Shurin, J. B., Suttle, C. A., & Matthews, B. (2013). Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses. ISME Journal, 7(3), 533-542. https://doi.org/10.1038/ismej.2012.138
T-RFLP fingerprinting analysis of bacterial communities in debris cones, Northern Victoria Land, Antarctica
Abramovich, R. S., Pomati, F., Jungblut, A. D., Guglielmin, M., & Neilan, B. A. (2012). T-RFLP fingerprinting analysis of bacterial communities in debris cones, Northern Victoria Land, Antarctica. Permafrost and Periglacial Processes, 23(3), 244-248. https://doi.org/10.1002/ppp.1749
Development and laboratory-scale testing of a fully automated online flow cytometer for drinking water analysis
Hammes, F., Broger, T., Weilenmann, H. U., Vital, M., Helbing, J., Bosshart, U., … Sonnleitner, B. (2012). Development and laboratory-scale testing of a fully automated online flow cytometer for drinking water analysis. Cytometry Part A, 81A(6), 508-516. https://doi.org/10.1002/cyto.a.22048
Genome-wide transcription analysis of <I>Escherichia coli</I> in response to extremely low-frequency magnetic fields
Huwiler, S. G., Beyer, C., Fröhlich, J., Hennecke, H., Egli, T., Schürmann, D., … Fischer, H. M. (2012). Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields. Bioelectromagnetics, 33(6), 488-496. https://doi.org/10.1002/bem.21709
Cultivation-independent Assessment of Bacterial Viability
Hammes, F., Berney, M., & Egli, T. (2011). Cultivation-independent Assessment of Bacterial Viability. In S. Müller & T. Bley (Eds.), Advances in Biochemical Engineering/Biotechnology: Vol. 124. High Resolution Microbial Single Cell Analytics (pp. 123-150). https://doi.org/10.1007/10_2010_95
Trace element uptake from vermiculite by the bacterium Pseudomonas fluorescens and its genetic derivatives to protect plants against specific diseases
Müller, B. (2011). Trace element uptake from vermiculite by the bacterium Pseudomonas fluorescens and its genetic derivatives to protect plants against specific diseases. In J. P. Humphrey & D. E. Boyd (Eds.), Environmental Science, Engineering and Technology. Clay: Types, properties and uses (pp. 407-418). Retrieved from https://www.novapublishers.com/catalog/product_info.php?products_id=20463
Cytometric methods for measuring bacteria in water: advantages, pitfalls and applications
Hammes, F., & Egli, T. (2010). Cytometric methods for measuring bacteria in water: advantages, pitfalls and applications. Analytical and Bioanalytical Chemistry, 397(3), 1083-1095. https://doi.org/10.1007/s00216-010-3646-3
Measurement and interpretation of microbial adenosine tri-phosphate (ATP) in aquatic environments
Hammes, F., Goldschmidt, F., Vital, M., Wang, Y., & Egli, T. (2010). Measurement and interpretation of microbial adenosine tri-phosphate (ATP) in aquatic environments. Water Research, 44(13), 3915-3923. https://doi.org/10.1016/j.watres.2010.04.015