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Automated flow cytometry as a flexible tool for comparing disinfection characteristics of indigenous bacterial communities and pure cultures
Mao, G., Wang, Y., & Hammes, F. (2021). Automated flow cytometry as a flexible tool for comparing disinfection characteristics of indigenous bacterial communities and pure cultures. Ecotoxicology and Environmental Safety, 225, 112799 (8 pp.). https://doi.org/10.1016/j.ecoenv.2021.112799
Dynamic hydraulics in a drinking water distribution system influence suspended particles and turbidity, but not microbiology
Prest, E. I., Schaap, P. G., Besmer, M. D., & Hammes, F. (2021). Dynamic hydraulics in a drinking water distribution system influence suspended particles and turbidity, but not microbiology. Water, 13(1), 109 (18 pp.). https://doi.org/10.3390/w13010109
Assessing antibiotics biodegradation and effects at sub-inhibitory concentrations by quantitative microbial community deconvolution
Özel Duygan, B. D., Gaille, C., Fenner, K., & van der Meer, J. R. (2021). Assessing antibiotics biodegradation and effects at sub-inhibitory concentrations by quantitative microbial community deconvolution. Frontiers in Environmental Science, 9, 737247 (17 pp.). https://doi.org/10.3389/fenvs.2021.737247
Improving the accuracy of flow cytometric quantification of microbial populations in sediments: importance of cell staining procedures
Deng, L., Fiskal, A., Han, X., Dubois, N., Bernasconi, S. M., & Lever, M. A. (2019). Improving the accuracy of flow cytometric quantification of microbial populations in sediments: importance of cell staining procedures. Frontiers in Microbiology, 10, 720 (13 pp.). https://doi.org/10.3389/fmicb.2019.00720
Identifying the underlying causes of biological instability in a full-scale drinking water supply system
Nescerecka, A., Juhna, T., & Hammes, F. (2018). Identifying the underlying causes of biological instability in a full-scale drinking water supply system. Water Research, 135, 11-21. https://doi.org/10.1016/j.watres.2018.02.006
Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data
Props, R., Rubbens, P., Besmer, M., Buysschaert, B., Sigrist, J., Weilenmann, H., … Hammes, F. (2018). Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data. Water Research, 145, 73-82. https://doi.org/10.1016/j.watres.2018.08.013
Characterization of aquatic biofilms with flow cytometry
Sgier, L., Merbt, S. N., Tlili, A., Kroll, A., & Zupanic, A. (2018). Characterization of aquatic biofilms with flow cytometry. Journal of Visualized Experiments (136), e57655 (9 pp.). https://doi.org/10.3791/57655
Evaluation of phototrophic stream biofilms under stress: comparing traditional and novel ecotoxicological endpoints after exposure to diuron
Sgier, L., Behra, R., Schönenberger, R., Kroll, A., & Zupanic, A. (2018). Evaluation of phototrophic stream biofilms under stress: comparing traditional and novel ecotoxicological endpoints after exposure to diuron. Frontiers in Microbiology, 9, 2974 (11 pp.). https://doi.org/10.3389/fmicb.2018.02974
Flow cytometric assessment of bacterial abundance in soils, sediments and sludge
Frossard, A., Hammes, F., & Gessner, M. O. (2016). Flow cytometric assessment of bacterial abundance in soils, sediments and sludge. Frontiers in Microbiology, 7, 903 (8 pp.). https://doi.org/10.3389/fmicb.2016.00903
A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining
Nescerecka, A., Hammes, F., & Juhna, T. (2016). A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining. Journal of Microbiological Methods, 131, 172-180. https://doi.org/10.1016/j.mimet.2016.10.022
A systematic approach for the assessment of bacterial growth-controlling factors linked to biological stability of drinking water in distribution systems
Prest, E. I., Hammes, F., Kötzsch, S., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2016). A systematic approach for the assessment of bacterial growth-controlling factors linked to biological stability of drinking water in distribution systems. Water Science and Technology: Water Supply, 16(4), 865-880. https://doi.org/10.2166/ws.2016.001
Biological stability of drinking water: controlling factors, methods, and challenges
Prest, E. I., Hammes, F., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2016). Biological stability of drinking water: controlling factors, methods, and challenges. Frontiers in Microbiology, 7, 45 (24 pp.). https://doi.org/10.3389/fmicb.2016.00045
Fluorescence-based tools for single-cell approaches in food microbiology
Bridier, A., Hammes, F., Canette, A., Bouchez, T., & Briandet, R. (2015). Fluorescence-based tools for single-cell approaches in food microbiology. International Journal of Food Microbiology, 213, 2-16. https://doi.org/10.1016/j.ijfoodmicro.2015.07.003
Dynamics of bacterial communities before and after distribution in a full-scale drinking water network
El-Chakhtoura, J., Prest, E., Saikaly, P., van Loosdrecht, M., Hammes, F., & Vrouwenvelder, H. (2015). Dynamics of bacterial communities before and after distribution in a full-scale drinking water network. Water Research, 74, 180-190. https://doi.org/10.1016/j.watres.2015.02.015
Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the <I>Arabidopsis arenosa</I> group (Brassicaceae)
Kolář, F., Lučanová, M., Záveská, E., Fuxová, G., Mandáková, T., Španiel, S., … Marhold, K. (2015). Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the Arabidopsis arenosa group (Brassicaceae). Biological Journal of the Linnean Society, 119, 673-688. https://doi.org/10.1111/bij.12479
Solar water disinfection by a Parabolic Trough Concentrator (PTC): flow-cytometric analysis of bacterial inactivation
Bigoni, R., Kötzsch, S., Sorlini, S., & Egli, T. (2014). Solar water disinfection by a Parabolic Trough Concentrator (PTC): flow-cytometric analysis of bacterial inactivation. Journal of Cleaner Production, 67, 62-71. https://doi.org/10.1016/j.jclepro.2013.12.014
The challange of clustering flow cytometry data from phytoplankton in lakes
Glüge, S., Pomati, F., Albert, C., Kauf, P., & Ott, T. (2014). The challange of clustering flow cytometry data from phytoplankton in lakes. In V. M. Mladenov & P. C. Ivanov (Eds.), Communications in computer and information science: Vol. 438. Nonlinear dynamics of electronic systems. 22nd international conference, NDES 2014, Albena, Bulgaria, July 4-6, 2014. Proceedings (pp. 379-386). https://doi.org/10.1007/978-3-319-08672-9_45
The challenge of clustering flow cytometry data from phytoplankton in lakes
Glüge, S., Pomati, F., Albert, C., Kauf, P., & Ott, T. (2014). The challenge of clustering flow cytometry data from phytoplankton in lakes. In V. M. Mladenov & P. C. Ivanov (Eds.), Communications in Computer and Information Science: Vol. 438. Nonlinear Dynamics of Electronic Systems, Communications in Computer and Information Science. 22nd International Conference, NDES 2014, Albena, Bulgaria,July 4-6, 2014. Proceedings (pp. 379-386).
Microbiological tap water profile of a medium-sized building and effect of water stagnation
Lipphaus, P., Hammes, F., Kötzsch, S., Green, J., Gillespie, S., & Nocker, A. (2014). Microbiological tap water profile of a medium-sized building and effect of water stagnation. Environmental Technology, 35(5), 620-628. https://doi.org/10.1080/09593330.2013.839748
Combining flow cytometry and 16S rRNA gene pyrosequencing: a promising approach for drinking water monitoring and characterization
Prest, E. I., El-Chakhtoura, J., Hammes, F., Saikaly, P. E., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2014). Combining flow cytometry and 16S rRNA gene pyrosequencing: a promising approach for drinking water monitoring and characterization. Water Research, 63, 179-189. https://doi.org/10.1016/j.watres.2014.06.020