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Improving the accuracy of flow cytometric quantification of microbial populations in sediments: importance of cell staining procedures
Deng, L., Fiskal, A., Han, X., Dubois, N., Bernasconi, S. M., & Lever, M. A. (2019). Improving the accuracy of flow cytometric quantification of microbial populations in sediments: importance of cell staining procedures. Frontiers in Microbiology, 10, 720 (13 pp.). https://doi.org/10.3389/fmicb.2019.00720
Identifying the underlying causes of biological instability in a full-scale drinking water supply system
Nescerecka, A., Juhna, T., & Hammes, F. (2018). Identifying the underlying causes of biological instability in a full-scale drinking water supply system. Water Research, 135, 11-21. https://doi.org/10.1016/j.watres.2018.02.006
Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data
Props, R., Rubbens, P., Besmer, M., Buysschaert, B., Sigrist, J., Weilenmann, H., … Hammes, F. (2018). Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data. Water Research, 145, 73-82. https://doi.org/10.1016/j.watres.2018.08.013
Characterization of aquatic biofilms with flow cytometry
Sgier, L., Merbt, S. N., Tlili, A., Kroll, A., & Zupanic, A. (2018). Characterization of aquatic biofilms with flow cytometry. Journal of Visualized Experiments, (136), e57655 (9 pp.). https://doi.org/10.3791/57655
Evaluation of phototrophic stream biofilms under stress: comparing traditional and novel ecotoxicological endpoints after exposure to diuron
Sgier, L., Behra, R., Schönenberger, R., Kroll, A., & Zupanic, A. (2018). Evaluation of phototrophic stream biofilms under stress: comparing traditional and novel ecotoxicological endpoints after exposure to diuron. Frontiers in Microbiology, 9, 2974 (11 pp.). https://doi.org/10.3389/fmicb.2018.02974
Flow cytometric assessment of bacterial abundance in soils, sediments and sludge
Frossard, A., Hammes, F., & Gessner, M. O. (2016). Flow cytometric assessment of bacterial abundance in soils, sediments and sludge. Frontiers in Microbiology, 7, 903 (8 pp.). https://doi.org/10.3389/fmicb.2016.00903
A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining
Nescerecka, A., Hammes, F., & Juhna, T. (2016). A pipeline for developing and testing staining protocols for flow cytometry, demonstrated with SYBR Green I and propidium iodide viability staining. Journal of Microbiological Methods, 131, 172-180. https://doi.org/10.1016/j.mimet.2016.10.022
A systematic approach for the assessment of bacterial growth-controlling factors linked to biological stability of drinking water in distribution systems
Prest, E. I., Hammes, F., Kötzsch, S., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2016). A systematic approach for the assessment of bacterial growth-controlling factors linked to biological stability of drinking water in distribution systems. Water Science and Technology: Water Supply, 16(4), 865-880. https://doi.org/10.2166/ws.2016.001
Biological stability of drinking water: controlling factors, methods, and challenges
Prest, E. I., Hammes, F., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2016). Biological stability of drinking water: controlling factors, methods, and challenges. Frontiers in Microbiology, 7, 45 (24 pp.). https://doi.org/10.3389/fmicb.2016.00045
Fluorescence-based tools for single-cell approaches in food microbiology
Bridier, A., Hammes, F., Canette, A., Bouchez, T., & Briandet, R. (2015). Fluorescence-based tools for single-cell approaches in food microbiology. International Journal of Food Microbiology, 213, 2-16. https://doi.org/10.1016/j.ijfoodmicro.2015.07.003
Dynamics of bacterial communities before and after distribution in a full-scale drinking water network
El-Chakhtoura, J., Prest, E., Saikaly, P., van Loosdrecht, M., Hammes, F., & Vrouwenvelder, H. (2015). Dynamics of bacterial communities before and after distribution in a full-scale drinking water network. Water Research, 74, 180-190. https://doi.org/10.1016/j.watres.2015.02.015
Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the <I>Arabidopsis arenosa</I> group (Brassicaceae)
Kolář, F., Lučanová, M., Záveská, E., Fuxová, G., Mandáková, T., Španiel, S., … Marhold, K. (2015). Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the Arabidopsis arenosa group (Brassicaceae). Biological Journal of the Linnean Society, 119, 673-688. https://doi.org/10.1111/bij.12479
Solar water disinfection by a Parabolic Trough Concentrator (PTC): flow-cytometric analysis of bacterial inactivation
Bigoni, R., Kötzsch, S., Sorlini, S., & Egli, T. (2014). Solar water disinfection by a Parabolic Trough Concentrator (PTC): flow-cytometric analysis of bacterial inactivation. Journal of Cleaner Production, 67, 62-71. https://doi.org/10.1016/j.jclepro.2013.12.014
The challenge of clustering flow cytometry data from phytoplankton in lakes
Glüge, S., Pomati, F., Albert, C., Kauf, P., & Ott, T. (2014). The challenge of clustering flow cytometry data from phytoplankton in lakes. In V. M. Mladenov & P. C. Ivanov (Eds.), Communications in Computer and Information Science: Vol. 438. Nonlinear Dynamics of Electronic Systems, Communications in Computer and Information Science. 22nd International Conference, NDES 2014, Albena, Bulgaria,July 4-6, 2014. Proceedings (pp. 379-386). Retrieved from http://www.springer.com/computer/hardware/book/978-3-319-08671-2
Microbiological tap water profile of a medium-sized building and effect of water stagnation
Lipphaus, P., Hammes, F., Kötzsch, S., Green, J., Gillespie, S., & Nocker, A. (2014). Microbiological tap water profile of a medium-sized building and effect of water stagnation. Environmental Technology, 35(5), 620-628. https://doi.org/10.1080/09593330.2013.839748
Combining flow cytometry and 16S rRNA gene pyrosequencing: a promising approach for drinking water monitoring and characterization
Prest, E. I., El-Chakhtoura, J., Hammes, F., Saikaly, P. E., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2014). Combining flow cytometry and 16S rRNA gene pyrosequencing: a promising approach for drinking water monitoring and characterization. Water Research, 63, 179-189. https://doi.org/10.1016/j.watres.2014.06.020
Physical extraction of microorganisms from water-saturated, packed sediment
Ugolini, F., Schroth, M. H., Bürgmann, H., & Zeyer, J. (2014). Physical extraction of microorganisms from water-saturated, packed sediment. Water Environment Research, 86(5), 407-416. https://doi.org/10.2175/106143013X13807328848216
Using coagulation to restrict microbial re-growth in tap water by phosphate limitation in water treatment
Wen, G., Ma, J., Huang, T. L., & Egli, T. (2014). Using coagulation to restrict microbial re-growth in tap water by phosphate limitation in water treatment. Journal of Hazardous Materials, 280, 348-355. https://doi.org/10.1016/j.jhazmat.2014.08.020
Flow cytometric assessment of microbial abundance in the near-field area of seawater reverse osmosis concentrate discharge
van der Merwe, R., Hammes, F., Lattemann, S., & Amy, G. (2014). Flow cytometric assessment of microbial abundance in the near-field area of seawater reverse osmosis concentrate discharge. Desalination, 343, 208-216. https://doi.org/10.1016/j.desal.2014.01.017
A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks
Lautenschlager, K., Hwang, C., Liu, W. T., Boon, N., Köster, O., Vrouwenvelder, H., … Hammes, F. (2013). A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks. Water Research, 47(9), 3015-3025. https://doi.org/10.1016/j.watres.2013.03.002