Thallium (Tl) is a highly toxic trace metal. It occurs mostly as soluble monovalent Tl(I) and less frequently as poorly soluble trivalent Tl(III). Laboratory studies have shown that vacancy-containing hexagonal birnessites can sorb Tl with a very high affinity via a mechanism that involves the oxidation of Tl(I) to Tl(III) and strong complexation of Tl(III), whereas other manganese (Mn) oxides bind Tl(I) non-oxidatively and with lower sorption affinity. Information on the mode of Tl uptake by natural Mn oxides in soils, on the other hand, is still limited. In this study, we characterized the association of Tl with Mn oxides and Tl (redox) speciation in a naturally Tl-rich soil using micro-focused synchrotron X-ray absorption near edge structure (XANES) spectroscopy and X-ray fluorescence (XRF) chemical imaging. The results show that most soil Tl was Tl(I) associated with micaceous clay minerals in the soil matrix. High levels of Tl in soil Mn concretions, on the other hand, were mostly identified as Tl(III), suggesting that oxidative Tl uptake by vacancy-containing hexagonal birnessite was the main process of Tl accumulation in soil Mn concretions. The spectroscopic results in combination with chemical extractions and published sorption isotherms for Tl on synthetic Mn oxides suggest that the formation and transformation of natural Mn oxides in soils and sorption competition of Tl with major and trace metal cations determine the extent and mode of Tl uptake by soil Mn oxides. Methodologically, this study compares classical micro-XRF element mapping combined with point XANES analyses for spatially-resolved element speciation with high-resolution chemical imaging of entire sample areas, which is of great interest for the geochemical community in light of diffraction-limited storage ring upgrades to many synchrotron lightsources.