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GPCR solubilization and quality control
Miljus, T., Sykes, D. A., Harwood, C. R., Vuckovic, Z., & Veprintsev, D. B. (2020). GPCR solubilization and quality control. In C. Perez & T. Maier (Eds.), Methods in molecular biology: Vol. 2127. Expression, purification, and structural biology of membrane proteins. https://doi.org/10.1007/978-1-0716-0373-4_8
Insights into the basal activity and activation mechanism of the β1 adrenergic receptor using native mass spectrometry
Gavriilidou, A. F. M., Hunziker, H., Mayer, D., Vuckovic, Z., Veprintsev, D. B., & Zenobi, R. (2019). Insights into the basal activity and activation mechanism of the β1 adrenergic receptor using native mass spectrometry. Journal of the American Society for Mass Spectrometry, 30(3), 529-537. https://doi.org/10.1007/s13361-018-2110-z
Distinct G protein-coupled receptor phosphorylation motifs modulate arrestin affinity and activation and global conformation
Mayer, D., Damberger, F. F., Samarasimhareddy, M., Feldmueller, M., Vuckovic, Z., Flock, T., … Veprintsev, D. B. (2019). Distinct G protein-coupled receptor phosphorylation motifs modulate arrestin affinity and activation and global conformation. Nature Communications, 10, 1261 (14 pp.). https://doi.org/10.1038/s41467-019-09204-y
A targeted approach for the synthesis of multi-phosphorylated peptides: a tool for studying the role of phosphorylation patterns in proteins
Samarasimhareddy, M., Mayer, D., Metanis, N., Veprintsev, D., Hurevich, M., & Friedler, A. (2019). A targeted approach for the synthesis of multi-phosphorylated peptides: a tool for studying the role of phosphorylation patterns in proteins. Organic and Biomolecular Chemistry, 17(42), 9284-9290. https://doi.org/10.1039/c9ob01874c
Native mass spectrometry gives insight into the allosteric binding mechanism of M2 pyruvate kinase to fructose-1,6-bisphosphate
Gavriilidou, A. F. M., Holding, F. P., Mayer, D., Coyle, J. E., Veprintsev, D. B., & Zenobi, R. (2018). Native mass spectrometry gives insight into the allosteric binding mechanism of M2 pyruvate kinase to fructose-1,6-bisphosphate. Biochemistry, 57(11), 1685-1689. https://doi.org/10.1021/acs.biochem.7b01270
Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms
Ziemski, M., Jomaa, A., Mayer, D., Rutz, S., Giese, C., Veprintsev, D., & Weber-Ban, E. (2018). Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms. eLife, 7, e34055 (27 pp.). https://doi.org/10.7554/eLife.34055
A new inhibitor of the β-arrestin/AP2 endocytic complex reveals interplay between GPCR internalization and signalling
Beautrait, A., Paradis, J. S., Zimmerman, B., Giubilaro, J., Nikolajev, L., Armando, S., … Bouvier, M. (2017). A new inhibitor of the β-arrestin/AP2 endocytic complex reveals interplay between GPCR internalization and signalling. Nature Communications, 8, 15054 (16 pp.). https://doi.org/10.1038/ncomms15054
High-throughput mutagenesis using a two-fragment PCR approach
Heydenreich, F. M., Miljuš, T., Jaussi, R., Benoit, R., Milić, D., & Veprintsev, D. B. (2017). High-throughput mutagenesis using a two-fragment PCR approach. Scientific Reports, 7, 6787 (11 pp.). https://doi.org/10.1038/s41598-017-07010-4
Production and purification of human Hsp90β in <em>Escherichia coli</em>
Radli, M., Veprintsev, D. B., & Rüdiger, S. G. D. (2017). Production and purification of human Hsp90β in Escherichia coli. PLoS One, 12(6), e0180047 (20 pp.). https://doi.org/10.1371/journal.pone.0180047
Backbone NMR reveals allosteric signal transduction networks in the β<sub>1</sub>-adrenergic receptor
Isogai, S., Deupi, X., Opitz, C., Heydenreich, F. M., Tsai, C. J., Brueckner, F., … Grzesiek, S. (2016). Backbone NMR reveals allosteric signal transduction networks in the β1-adrenergic receptor. Nature, 530(7589), 237-241. https://doi.org/10.1038/nature16577
Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region
Venkatakrishnan, A. J., Deupi, X., Lebon, G., Heydenreich, F. M., Flock, T., Miljus, T., … Babu, M. M. (2016). Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region. Nature, 536(7617), 484-487. https://doi.org/10.1038/nature19107
Universal allosteric mechanism for Gα activation by GPCRs
Flock, T., Ravarani, C. N. J., Sun, D., Venkatakrishnan, A. J., Kayikci, M., Tate, C. G., … Babu, M. M. (2015). Universal allosteric mechanism for Gα activation by GPCRs. Nature, 524, 173-179. https://doi.org/10.1038/nature14663
Stabilization of G protein-coupled receptors by point mutations
Heydenreich, F. M., Vuckovic, Z., Matkovic, M., & Veprintsev, D. B. (2015). Stabilization of G protein-coupled receptors by point mutations. Frontiers in Pharmacology, 6(82), (15 pp.). https://doi.org/10.3389/fphar.2015.00082
Large-scale production and protein engineering of G protein-coupled receptors for structural studies
Milic, D., & Veprintsev, D. B. (2015). Large-scale production and protein engineering of G protein-coupled receptors for structural studies. Frontiers in Pharmacology, 6(MAR), (24 pp.). https://doi.org/10.3389/fphar.2015.00066
Probing Gα<sub>i1</sub> protein activation at single-amino acid resolution
Sun, D., Flock, T., Deupi, X., Maeda, S., Matkovic, M., Mendieta, S., … Veprintsev, D. B. (2015). Probing Gαi1 protein activation at single-amino acid resolution. Nature Structural and Molecular Biology, 22(9), 686-694. https://doi.org/10.1038/nsmb.3070
Structure of AMP-PNP-bound BtuCD and mechanism of ATP-powered vitamin B12 transport by BtuCD-F
Korkhov, V. M., Mireku, S. A., Veprintsev, D. B., & Locher, K. P. (2014). Structure of AMP-PNP-bound BtuCD and mechanism of ATP-powered vitamin B12 transport by BtuCD-F. Nature Structural and Molecular Biology, 21(12), 1097-1099. https://doi.org/10.1038/nsmb.2918
Crystallization scale preparation of a stable GPCR signaling complex between constitutively active rhodopsin and G-protein
Maeda, S., Sun, D., Singhal, A., Foggetta, M., Schmid, G., Standfuss, J., … Schertler, G. F. X. (2014). Crystallization scale preparation of a stable GPCR signaling complex between constitutively active rhodopsin and G-protein. PLoS One, 9(6), e98714 (11 pp.). https://doi.org/10.1371/journal.pone.0098714
End Binding Proteins Are Obligatory Dimers
Sen, I., Veprintsev, D., Akhmanova, A., & Steinmetz, M. O. (2013). End Binding Proteins Are Obligatory Dimers. PLoS One, 8(9), e74448. https://doi.org/10.1371/journal.pone.0074448
Insights into congenital stationary night blindness based on the structure of G90D rhodopsin
Singhal, A., Ostermaier, M. K., Vishnivetskiy, S. A., Panneels, V., Homan, K. T., Tesmer, J. J. G., … Standfuss, J. (2013). Insights into congenital stationary night blindness based on the structure of G90D rhodopsin. EMBO Reports, 14(6), 520-526. https://doi.org/10.1038/embor.2013.44
AAscan, PCRdesign and MutantChecker: a suite of programs for primer design and sequence analysis for high-throughput scanning mutagenesis.
Sun, D., Ostermaier, M. K., Heydenreich, F. M., Mayer, D., Jaussi, R., Standfuss, J., & Veprintsev, D. B. (2013). AAscan, PCRdesign and MutantChecker: a suite of programs for primer design and sequence analysis for high-throughput scanning mutagenesis. PLoS One, 8(10), e78878 (9 pp.). https://doi.org/10.1371/journal.pone.0078878