| Principles of ion binding to RNA inferred from the analysis of a 1.55 Å resolution bacterial ribosome structure – Part I: Mg<sup>2+</sup>
Leonarski, F., Henning-Knechtel, A., Kirmizialtin, S., Ennifar, E., & Auffinger, P. (2025). Principles of ion binding to RNA inferred from the analysis of a 1.55 Å resolution bacterial ribosome structure – Part I: Mg2+. Nucleic Acids Research, 53(1), gkae1148 (21 pp.). https://doi.org/10.1093/nar/gkae1148 |
| <em>TORO Indexer</em>: a <em>PyTorch</em>-based indexing algorithm for kilohertz serial crystallography
Gasparotto, P., Barba, L., Stadler, H. C., Assmann, G., Mendonça, H., Ashton, A. W., … Béjar, B. (2024). TORO Indexer: a PyTorch-based indexing algorithm for kilohertz serial crystallography. Journal of Applied Crystallography, 57(4), 931-944. https://doi.org/10.1107/S1600576724003182 |
| Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography
Glover, H., Saßmannshausen, T., Bertrand, Q., Trabuco, M., Slavov, C., Bacchin, A., … Standfuss, J. (2024). Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nature Communications, 15(1), 10837 (13 pp.). https://doi.org/10.1038/s41467-024-55109-w |
| Jungfraujoch: hardware-accelerated data-acquisition system for kilohertz pixel-array X-ray detectors
Leonarski, F., Brückner, M., Lopez-Cuenca, C., Mozzanica, A., Stadler, H. C., Matěj, Z., … Wang, M. (2023). Jungfraujoch: hardware-accelerated data-acquisition system for kilohertz pixel-array X-ray detectors. Journal of Synchrotron Radiation, 30, 227-234. https://doi.org/10.1107/S1600577522010268 |
| Kilohertz serial crystallography with the JUNGFRAU detector at a fourth-generation synchrotron source
Leonarski, F., Nan, J., Matej, Z., Bertrand, Q., Furrer, A., Gorgisyan, I., … Dworkowski, F. (2023). Kilohertz serial crystallography with the JUNGFRAU detector at a fourth-generation synchrotron source. IUCrJ, 10(6), 729-737. https://doi.org/10.1107/S2052252523008618 |
| Probing ligand binding of endothiapepsin by 'temperature-resolved' macromolecular crystallography
Huang, C. Y., Aumonier, S., Engilberge, S., Eris, D., Smith, K. M. L., Leonarski, F., … Wang, M. (2022). Probing ligand binding of endothiapepsin by 'temperature-resolved' macromolecular crystallography. Acta Crystallographica Section D: Structural Biology, 78, 964-974. https://doi.org/10.1107/S205979832200612X |
| Conceptual design report on controls and science IT for the SLS 2.0 upgrade project
Ashton, A., Augustin, S., Babic, A., Celcer, T., Ebner, S. G., Egli, S., … Zimoch, E. (2021). Conceptual design report on controls and science IT for the SLS 2.0 upgrade project. (PSI Bericht, Report No.: 21-03). Paul Scherrer Institut. |
| Gold standard for macromolecular crystallography diffraction data
Bernstein, H. J., Förster, A., Bhowmick, A., Brewster, A. S., Brockhauser, S., Gelisio, L., … Winter, G. (2020). Gold standard for macromolecular crystallography diffraction data. IUCrJ, 7(5), 784-792. https://doi.org/10.1107/S2052252520008672 |
| Natural hybrid silica/protein superstructure at atomic resolution
Görlich, S., Samuel, A. J., Best, R. J., Seidel, R., Vacelet, J., Leonarski, F. K., … Zlotnikov, I. (2020). Natural hybrid silica/protein superstructure at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America PNAS, 117(49), 31088-31093. https://doi.org/10.1073/pnas.2019140117 |
| JUNGFRAU detector for brighter x-ray sources: solutions for IT and data science challenges in macromolecular crystallography
Leonarski, F., Mozzanica, A., Brückner, M., Lopez-Cuenca, C., Redford, S., Sala, L., … Wang, M. (2020). JUNGFRAU detector for brighter x-ray sources: solutions for IT and data science challenges in macromolecular crystallography. Structural Dynamics, 7(1), 014305 (13 pp.). https://doi.org/10.1063/1.5143480 |
| X-ray fluorescence detection for serial macromolecular crystallography using a JUNGFRAU pixel detector
Martiel, I., Mozzanica, A., Opara, N. L., Panepucci, E., Leonarski, F., Redford, S., … Wang, M. (2020). X-ray fluorescence detection for serial macromolecular crystallography using a JUNGFRAU pixel detector. Journal of Synchrotron Radiation, 27, 329-339. https://doi.org/10.1107/S1600577519016758 |
| Advances in long-wavelength native phasing at X-ray free-electron lasers
Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., … Milne, C. J. (2020). Advances in long-wavelength native phasing at X-ray free-electron lasers. IUCrJ, 7, 965-975. https://doi.org/10.1107/S2052252520011379 |
| Long-wavelength native-SAD phasing: opportunities and challenges
Basu, S., Olieric, V., Leonarski, F., Matsugaki, N., Kawano, Y., Takashi, T., … Wang, M. (2019). Long-wavelength native-SAD phasing: opportunities and challenges. IUCrJ, 6(3), 1-14. https://doi.org/10.1107/S2052252519002756 |
| Nucleobase carbonyl groups are poor Mg<sup>2+</sup> inner-sphere binders but excellent monovalent ion binders - a critical PDB survey
Leonarski, F., D’Ascenzo, L., & Auffinger, P. (2019). Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders - a critical PDB survey. RNA, 25(11), 173-192. https://doi.org/10.1261/rna.068437.118 |
| Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector
Leonarski, F., Redford, S., Mozzanica, A., Lopez-Cuenca, C., Panepucci, E., Nass, K., … Wang, M. (2018). Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector. Nature Methods, 15(10), 799-804. https://doi.org/10.1038/s41592-018-0143-7 |
| The JUNGFRAU detector for applications at synchrotron light sources and XFELs
Mozzanica, A., Andrä, M., Barten, R., Bergamaschi, A., Chiriotti, S., Brückner, M., … Zhang, J. (2018). The JUNGFRAU detector for applications at synchrotron light sources and XFELs. Synchrotron Radiation News, 31(6), 16-20. https://doi.org/10.1080/08940886.2018.1528429 |
| Operation and performance of the JUNGFRAU photon detector during first FEL and synchrotron experiments
Redford, S., Andrä, M., Barten, R., Bergamaschi, A., Brückner, M., Chiriotti, S., … Zhang, J. (2018). Operation and performance of the JUNGFRAU photon detector during first FEL and synchrotron experiments. Journal of Instrumentation, 13(11), C11006 (9 pp.). https://doi.org/10.1088/1748-0221/13/11/C11006 |
