| Deep learning applications in protein crystallography
Matinyan, S., Filipcik, P., & Abrahams, J. P. (2024). Deep learning applications in protein crystallography. Acta Crystallographica Section A: Foundations and Advances, 80(1), 1-17. https://doi.org/10.1107/S2053273323009300 |
| DiffraGAN: a conditional generative adversarial network for phasing single molecule diffraction data to atomic resolution
Matinyan, S., Filipcik, P., van Genderen, E., & Abrahams, J. P. (2024). DiffraGAN: a conditional generative adversarial network for phasing single molecule diffraction data to atomic resolution. Frontiers in Molecular Biosciences, 11, 1386963 (11 pp.). https://doi.org/10.3389/fmolb.2024.1386963 |
| Electrostatic interference control of a high-energy coherent electron beam using a three-element Boersch phase shifter
Thakkar, P., Guzenko, V. A., Lu, P., Dunin-Borkowski, R. E., Abahams, J. P., & Tsujino, S. (2024). Electrostatic interference control of a high-energy coherent electron beam using a three-element Boersch phase shifter. Japanese Journal of Applied Physics. https://doi.org/10.35848/1347-4065/ad7341 |
| Machine learning for classifying narrow-beam electron diffraction data
Matinyan, S., Demir, B., Filipcik, P., Abrahams, J. P., & van Genderen, E. (2023). Machine learning for classifying narrow-beam electron diffraction data. Acta Crystallographica Section A: Foundations and Advances, 79, 360-368. https://doi.org/10.1107/S2053273323004680 |
| TERSE/PROLIX (TRPX) - a new algorithm for fast and lossless compression and decompression of diffraction and cryo-EM data
Matinyan, S., & Abrahams, J. P. (2023). TERSE/PROLIX (TRPX) - a new algorithm for fast and lossless compression and decompression of diffraction and cryo-EM data. Acta Crystallographica Section A: Foundations and Advances, 79(6), 536-541. https://doi.org/10.1107/S205327332300760X |
| Cryptosporulation in <em>Kurthia</em> spp. forces a rethinking of asporogenesis in Firmicutes
Fatton, M., Filippidou, S., Junier, T., Cailleau, G., Berge, M., Poppleton, D., … Junier, P. (2022). Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes. Environmental Microbiology, 24(12), 6320-6335. https://doi.org/10.1111/1462-2920.16145 |
| Electron detection with CdTe and GaAs sensors using the charge integrating hybrid pixel detector JUNGFRAU
Fröjdh, E., Abrahams, J. P., Andrä, M., Barten, R., Bergamaschi, A., Brückner, M., … Zhang, J. (2022). Electron detection with CdTe and GaAs sensors using the charge integrating hybrid pixel detector JUNGFRAU. Journal of Instrumentation, 17, C01020 (12 pp.). https://doi.org/10.1088/1748-0221/17/01/C01020 |
| Catalytic cycling of human mitochondrial Lon protease
Mohammed, I., Schmitz, K. A., Schenck, N., Balasopoulos, D., Topitsch, A., Maier, T., & Abrahams, J. P. (2022). Catalytic cycling of human mitochondrial Lon protease. Structure, 30(9), 1254-1268. https://doi.org/10.1016/j.str.2022.06.006 |
| Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals
Blum, T. B., Housset, D., Clabbers, M. T. B., van Genderen, E., Bacia-Verloop, M., Zander, U., … Abrahams, J. P. (2021). Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals. Acta Crystallographica Section D: Structural Biology, 77, 75-85. https://doi.org/10.1107/S2059798320014540 |
| Voltage-controlled three-electron-beam interference by a three-element Boersch phase shifter with top and bottom shielding electrodes
Thakkar, P., Guzenko, V. A., Lu, P. H., Dunin-Borkowski, R. E., Abrahams, J. P., & Tsujino, S. (2021). Voltage-controlled three-electron-beam interference by a three-element Boersch phase shifter with top and bottom shielding electrodes. In S. Purcell & J. P. Mazellier (Eds.), International conference on vacuum nanoelectronics (IVNC). 2021 34th international vacuum nanoelectronics conference (IVNC) (p. 21299961 (2 pp.). https://doi.org/10.1109/IVNC52431.2021.9600711 |
| Cryo-electron microscopy imaging of Alzheimer's amyloid-beta 42 oligomer displayed on a functionally and structurally relevant scaffold
Wu, J., Blum, T. B., Farrell, D. P., DiMaio, F., Abrahams, J. P., & Luo, J. (2021). Cryo-electron microscopy imaging of Alzheimer's amyloid-beta 42 oligomer displayed on a functionally and structurally relevant scaffold. Angewandte Chemie International Edition, 60(34), 18680-18687. https://doi.org/10.1002/anie.202104497 |
| Ectopic positioning of the cell division plane is associated with single amino acid substitutions in the FtsZ-recruiting SsgB in <em>Streptomyces</em>
Xiao, X., Willemse, J., Voskamp, P., Li, X., Prota, A. E., Lamers, M., … van Wezel, G. P. (2021). Ectopic positioning of the cell division plane is associated with single amino acid substitutions in the FtsZ-recruiting SsgB in Streptomyces. Open Biology, 11(2), 200409 (14 pp.). https://doi.org/10.1098/rsob.200409 |
| A lipocalin mediates unidirectional heme biomineralization in malaria parasites
Matz, J. M., Drepper, B., Blum, T. B., van Genderen, E., Burrell, A., Martin, P., … Blackman, M. J. (2020). A lipocalin mediates unidirectional heme biomineralization in malaria parasites. Proceedings of the National Academy of Sciences of the United States of America PNAS, 117(28), 16546-16556. https://doi.org/10.1073/pnas.2001153117 |
| Shape-shifting peptide nanomaterials: surface asymmetry enables pH-dependent formation and interconversion of collagen tubes and sheets
Merg, A. D., Touponse, G., van Genderen, E., Blum, T. B., Zuo, X., Bazrafshan, A., … Conticello, V. P. (2020). Shape-shifting peptide nanomaterials: surface asymmetry enables pH-dependent formation and interconversion of collagen tubes and sheets. Journal of the American Chemical Society, 142(47), 19956-19968. https://doi.org/10.1021/jacs.0c08174 |
| Demonstration of the voltage-controlled three-beam interference of high-energy coherent electron beam
Thakkar, P., Guzenko, V., Abrahams, J. P., Tsujino, S., Lu, P. H., & Dunin-Borkowski, R. E. (2020). Demonstration of the voltage-controlled three-beam interference of high-energy coherent electron beam. In 2020 33rd international vacuum nanoelectronics conference (IVNC). 33rd international vacuum nanoelectronics conference (IVNC) July 6-7, 2020 (p. 9203341 (2 pp.). https://doi.org/10.1109/IVNC49440.2020.9203341 |
| Fabrication of low aspect ratio three-element Boersch phase shifters for voltage-controlled three electron beam interference
Thakkar, P., Guzenko, V. A., Lu, P. H., Dunin-Borkowski, R. E., Abrahams, J. P., & Tsujino, S. (2020). Fabrication of low aspect ratio three-element Boersch phase shifters for voltage-controlled three electron beam interference. Journal of Applied Physics, 128(13), 134502 (13 pp.). https://doi.org/10.1063/5.0020383 |
| Functional and structural insights into a novel promiscuous ketoreductase of the lugdunomycin biosynthetic pathway
Xiao, X., Elsayed, S. S., Wu, C., van der Heul, H. U., Metsä-Ketelä, M., Du, C., … van Wezel, G. P. (2020). Functional and structural insights into a novel promiscuous ketoreductase of the lugdunomycin biosynthetic pathway. ACS Chemical Biology, 15(9), 2529-2538. https://doi.org/10.1021/acschembio.0c00564 |
| Sub-pixel electron detection using a convolutional neural network
van Schayck, J. P., van Genderen, E., Maddox, E., Roussel, L., Boulanger, H., Fröjdh, E., … Ravelli, R. B. G. (2020). Sub-pixel electron detection using a convolutional neural network. Ultramicroscopy, 218, 113091 (10 pp.). https://doi.org/10.1016/j.ultramic.2020.113091 |
| The wild-type flagellar filament of the Firmicute <em>Kurthia </em>at 2.8 Å resolution <em>in vivo</em>
Blum, T. B., Filippidou, S., Fatton, M., Junier, P., & Abrahams, J. P. (2019). The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo. Scientific Reports, 9(1), 14948 (8 pp.). https://doi.org/10.1038/s41598-019-51440-1 |
| Reducing dynamical electron scattering reveals hydrogen atoms
Clabbers, M. T. B., Gruene, T., van Genderen, E., & Abrahams, J. P. (2019). Reducing dynamical electron scattering reveals hydrogen atoms. Acta Crystallographica Section A: Foundations and Advances, 75(1), 82-93. https://doi.org/10.1107/S2053273318013918 |
