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TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins
Perea, M., Lugtenburg, I., Mayol, E., Cordomí, A., Deupí, X., Pardo, L., & Olivella, M. (2015). TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins. BMC Bioinformatics, 16, 266 (6 pp.). https://doi.org/10.1186/s12859-015-0699-5
Protein interface classification by evolutionary analysis
Duarte, J. M., Srebniak, A., Schärer, M. A., & Capitani, G. (2012). Protein interface classification by evolutionary analysis. BMC Bioinformatics, 13(1), 334 (16 pp.). https://doi.org/10.1186/1471-2105-13-334
Optimal contact definition for reconstruction of contact maps
Duarte, J. M., Sathyapriya, R., Stehr, H., Filippis, I., & Lappe, M. (2010). Optimal contact definition for reconstruction of contact maps. BMC Bioinformatics, 11, 283 (10 pp.). https://doi.org/10.1186/1471-2105-11-283