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Impact of 3-deazapurine nucleobases on RNA properties
Bereiter, R., Himmelstoß, M., Renard, E., Mairhofer, E., Egger, M., Breuker, K., … Micura, R. (2021). Impact of 3-deazapurine nucleobases on RNA properties. Nucleic Acids Research, 49(8), 4281-4293. https://doi.org/10.1093/nar/gkab256
An <em>in vitro</em> reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands
Campagne, S., de Vries, T., Malard, F., Afanasyev, P., Dorn, G., Dedic, E., … Allain, F. H. T. (2021). An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands. Nucleic Acids Research, 49(11), e63 (13 pp.). https://doi.org/10.1093/nar/gkab135
The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination
Ramos-Morales, E., Bayam, E., Del-Pozo-Rodríguez, J., Salinas-Giegé, T., Marek, M., Tilly, P., … Romier, C. (2021). The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination. Nucleic Acids Research, 49(11), 6529-6548. https://doi.org/10.1093/nar/gkab436
Structural basis for the recognition of transiently structured AU-rich elements by Roquin
Binas, O., Tants, J. N., Peter, S. A., Janowski, R., Davydova, E., Braun, J., … Schlundt, A. (2020). Structural basis for the recognition of transiently structured AU-rich elements by Roquin. Nucleic Acids Research, 48(13), 7385-7403. https://doi.org/10.1093/nar/gkaa465
&#039;Drc&#039;, a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses
Boon, M., De Zitter, E., De Smet, J., Wagemans, J., Voet, M., Pennemann, F. L., … Lavigne, R. (2020). 'Drc', a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses. Nucleic Acids Research, 48(1), 445-459. https://doi.org/10.1093/nar/gkz1048
Structural and functional insights into CWC27/CWC22 heterodimer linking the exon junction complex to spliceosomes
Busetto, V., Barbosa, I., Basquin, J., Marquenet, É., Hocq, R., Hennion, M., … Le Hir, H. (2020). Structural and functional insights into CWC27/CWC22 heterodimer linking the exon junction complex to spliceosomes. Nucleic Acids Research, 48(10), 5670-5683. https://doi.org/10.1093/nar/gkaa267
HomolWat: a web server tool to incorporate &#039;homologous&#039; water molecules into GPCR structures
Mayol, E., García-Recio, A., Tiemann, J. K. S., Hildebrand, P. W., Guixà-González, R., Olivella, M., & Cordomí, A. (2020). HomolWat: a web server tool to incorporate 'homologous' water molecules into GPCR structures. Nucleic Acids Research, 48(W1), W54-W59. https://doi.org/10.1093/nar/gkaa440
The human telomeric nucleosome displays distinct structural and dynamic properties
Soman, A., Liew, C. W., Teo, H. L., Berezhnoy, N. V., Olieric, V., Korolev, N., … Nordenskiöld, L. (2020). The human telomeric nucleosome displays distinct structural and dynamic properties. Nucleic Acids Research, 48(10), 5383-5396. https://doi.org/10.1093/nar/gkaa289
Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1
Traczyk, A., Liew, C. W., Gill, D. J., & Rhodes, D. (2020). Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1. Nucleic Acids Research, 48(8), 4562-4571. https://doi.org/10.1093/nar/gkaa171
Characterization of the pleiotropic LysR-type transcription regulator LeuO of &lt;em&gt;Escherichia coli&lt;/em&gt;
Fragel, S. M., Montada, A., Heermann, R., Baumann, U., Schacherl, M., & Schnetz, K. (2019). Characterization of the pleiotropic LysR-type transcription regulator LeuO of Escherichia coli. Nucleic Acids Research, 47(14), 7363-7379. https://doi.org/10.1093/nar/gkz506
DNA-guided DNA cleavage at moderate temperatures by &lt;em&gt;Clostridium butyricum&lt;/em&gt; Argonaute
Hegge, J. W., Swarts, D. C., Chandradoss, S. D., Cui, T. J., Kneppers, J., Jinek, M., … van der Oost, J. (2019). DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute. Nucleic Acids Research, 47(11), 5809-5821. https://doi.org/10.1093/nar/gkz306
Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor
Kroupova, A., Ivaşcu, A., Reimão-Pinto, M. M., Ameres, S. L., & Jinek, M. (2019). Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Research, 47(2), 1030-1042. https://doi.org/10.1093/nar/gky1164
Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of &lt;em&gt;Halobacterium salinarum&lt;/em&gt; oxidative stress-dependent protein &lt;em&gt;hs&lt;/em&gt;RosR
Kutnowski, N., Shmulevich, F., Davidov, G., Shahar, A., Bar-Zvi, D., Eichler, J., … Shaanan, B. (2019). Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR. Nucleic Acids Research, 47(16), 8860-8873. https://doi.org/10.1093/nar/gkz604
HuR biological function involves RRM3-mediated dimerization and RNA binding by all three RRMs
Pabis, M., Popowicz, G. M., Stehle, R., Fernández-Ramos, D., Asami, S., Warner, L., … Sattler, M. (2019). HuR biological function involves RRM3-mediated dimerization and RNA binding by all three RRMs. Nucleic Acids Research, 47(2), 1011-1029. https://doi.org/10.1093/nar/gky1138
Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors
Pabis, M., Corsini, L., Vincendeau, M., Tripsianes, K., Gibson, T. J., Brack-Werner, R., & Sattler, M. (2019). Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors. Nucleic Acids Research, 47(9), 4859-4871. https://doi.org/10.1093/nar/gkz185
Structural motifs in eIF4G and 4E-BPs modulate their binding to eIF4E to regulate translation initiation in yeast
Grüner, S., Weber, R., Peter, D., Chung, M. Y., Igreja, C., Valkov, E., & Izaurralde, E. (2018). Structural motifs in eIF4G and 4E-BPs modulate their binding to eIF4E to regulate translation initiation in yeast. Nucleic Acids Research, 46(13), 6893-6908. https://doi.org/10.1093/nar/gky542
Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs
Nishimura, T., Fakim, H., Brandmann, T., Youn, J. Y., Gingras, A. C., Jinek, M., & Fabian, M. R. (2018). Human MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acids Research, 46(22), 12008-12021. https://doi.org/10.1093/nar/gky1011
Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria
Rozov, A., Wolff, P., Grosjean, H., Yusupov, M., Yusupova, G., & Westhof, E. (2018). Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria. Nucleic Acids Research, 46(14), 7425-7435. https://doi.org/10.1093/nar/gky547
The AibR-isovaleryl coenzyme A regulator and its DNA binding site – a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus
Bock, T., Volz, C., Hering, V., Scrima, A., Müller, R., & Blankenfeldt, W. (2017). The AibR-isovaleryl coenzyme A regulator and its DNA binding site – a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus. Nucleic Acids Research, 45(4), 2166-2178. https://doi.org/10.1093/nar/gkw1238
Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa
Jaroensuk, J., Atichartpongkul, S., Chionh, Y. H., Hwa Wong, Y., Liew, C. W., McBee, M. E., … Fuangthong, M. (2016). Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa. Nucleic Acids Research, 44(22), 10834-10848. https://doi.org/10.1093/nar/gkw870
 

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