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<em>Arabis alpina</em>: a perennial model plant for ecological genomics and life‐history evolution
Wötzel, S., Andrello, M., Albani, M. C., Koch, M. A., Coupland, G., & Gugerli, F. (2022). Arabis alpina: a perennial model plant for ecological genomics and life‐history evolution. Molecular Ecology Resources, 22(2), 468-486. https://doi.org/10.1111/1755-0998.13490
A deep dig - hindsight on Holocene vegetation composition from ancient environmental DNA
Gugerli, F., Alvarez, N., & Tinner, W. (2013). A deep dig - hindsight on Holocene vegetation composition from ancient environmental DNA. Molecular Ecology, 22(13), 3433-3436. https://doi.org/10.1111/mec.12356
A new individual-based spatial approach for identifying genetic discontinuities in natural populations
Manel, S., Berthoud, F., Bellemain, E., Gaudeul, M., Luikart, G., Swenson, J. E., … Salanon, R. (2007). A new individual-based spatial approach for identifying genetic discontinuities in natural populations. Molecular Ecology, 16(10), 2031-2043. https://doi.org/10.1111/j.1365-294X.2007.03293.x
A practical guide to environmental association analysis in landscape genomics
Rellstab, C., Gugerli, F., Eckert, A. J., Hancock, A. M., & Holderegger, R. (2015). A practical guide to environmental association analysis in landscape genomics. Molecular Ecology, 24(17), 4348-4370. https://doi.org/10.1111/mec.13322
A range‐wide postglacial history of Swiss stone pine based on molecular markers and palaeoecological evidence
Gugerli, F., Brodbeck, S., Lendvay, B., Dauphin, B., Bagnoli, F., van der Knaap, W. O., … Schwörer, C. (2023). A range‐wide postglacial history of Swiss stone pine based on molecular markers and palaeoecological evidence. Journal of Biogeography, 50(6), 1049-1062. https://doi.org/10.1111/jbi.14586
A reference genome sequence for the European silver fir (<em>Abies alba </em>Mill.): a community-generated genomic resource
Mosca, E., Cruz, F., Gómez-Garrido, J., Bianco, L., Rellstab, C., Brodbeck, S., … Neale, D. B. (2019). A reference genome sequence for the European silver fir (Abies alba Mill.): a community-generated genomic resource. G3: Genes, Genomes, Genetics, 9(7), 2039-2049. https://doi.org/10.1534/g3.119.400083
A species-discriminatory single-nucleotide polymorphism set reveals maintenance of species integrity in hybridizing European white oaks (<em>Quercus</em> spp.) despite high levels of admixture
Reutimann, O., Gugerli, F., & Rellstab, C. (2020). A species-discriminatory single-nucleotide polymorphism set reveals maintenance of species integrity in hybridizing European white oaks (Quercus spp.) despite high levels of admixture. Annals of Botany, 125(4), 663-676. https://doi.org/10.1093/aob/mcaa001
Abiotic factors predict taxonomic composition and genetic admixture in populations of hybridizing white oak species (<em>Quercus</em> sect. <em>Quercus</em>) on regional scale
Reutimann, O., Dauphin, B., Baltensweiler, A., Gugerli, F., Kremer, A., & Rellstab, C. (2023). Abiotic factors predict taxonomic composition and genetic admixture in populations of hybridizing white oak species (Quercus sect. Quercus) on regional scale. Tree Genetics and Genomes, 19, 22 (14 pp.). https://doi.org/10.1007/s11295-023-01598-7
Adaptation to local climate in multi-trait space: evidence from silver fir (&lt;em&gt;Abies alba &lt;/em&gt;Mill.) populations across a heterogeneous environment
Csilléry, K., Ovaskainen, O., Sperisen, C., Buchmann, N., Widmer, A., & Gugerli, F. (2020). Adaptation to local climate in multi-trait space: evidence from silver fir (Abies alba Mill.) populations across a heterogeneous environment. Heredity, 124, 77-92. https://doi.org/10.1038/s41437-019-0240-0
Adaptive vs. neutral genetic diversity: implications for landscape genetics
Holderegger, R., Kamm, U., & Gugerli, F. (2006). Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecology, 21(6), 797-807. https://doi.org/10.1007/s10980-005-5245-9
Advancing forest inventorying and monitoring
Ferretti, M., Fischer, C., Gessler, A., Graham, C., Meusburger, K., Abegg, M., … Shackleton, R. T. (2024). Advancing forest inventorying and monitoring. Annals of Forest Science, 81(1), 6 (25 pp.). https://doi.org/10.1186/s13595-023-01220-9
Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences
Barthe, S., Gugerli, F., Barkley, N. A., Maggia, L., Cardi, C., & Scotti, I. (2012). Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences. PLoS One, 7(7), e40699 (9 pp.). https://doi.org/10.1371/journal.pone.0040699
An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates
Buehler, D., Poncet, B. N., Holderegger, R., Manel, S., Taberlet, P., & Gugerli, F. (2013). An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates. Evolutionary Ecology, 27(2), 285-300. https://doi.org/10.1007/s10682-012-9597-8
Ancient plant DNA: review and prospects
Gugerli, F., Parducci, L., & Petit, R. J. (2005). Ancient plant DNA: review and prospects. New Phytologist, 166(2), 409-418. https://doi.org/10.1111/j.1469-8137.2005.01360.x
Application of genetic markers to the discrimination of pure European Black Poplar (<em>Populus nigra</em>) from American Black Poplar (<em>P. deltoides</em>) and Hybrid Poplars (<em>P. x canadensis</em>) in Switzerland
Holderegger, R., Angelone, S., Brodbeck, S., Csencsics, D., Gugerli, F., Hoebee, S. E., & Finkeldey, R. (2005). Application of genetic markers to the discrimination of pure European Black Poplar (Populus nigra) from American Black Poplar (P. deltoides) and Hybrid Poplars (P. x canadensis) in Switzerland. Trees: Structure and Function, 19(6), 742-747. https://doi.org/10.1007/s00468-005-0006-6
Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species
Zulliger, D., Schnyder, E., & Gugerli, F. (2013). Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species. Molecular Ecology, 22(6), 1626-1639. https://doi.org/10.1111/mec.12199
Ausbreitung der Elsbeerpollen. Destination unbekannt?
Wirth, L. R., Hoebee, S. E., Arnold, U., Düggelin, C., Brodbeck, S., Rotach, P., … Holderegger, R. (2005). Ausbreitung der Elsbeerpollen. Destination unbekannt? Corminaria (23), 3-5.
Bedeutung der lokalen Anpassung in der Naturschutzgenetik
Rellstab, C., Fischer, M. C., Csencsics, D., Gugerli, F., & Holderegger, R. (2017). Bedeutung der lokalen Anpassung in der Naturschutzgenetik. In D. Csencsics & F. Gugerli (Eds.), WSL Berichte. Naturschutzgenetik (pp. 31-37). Eidg. Forschungsanstalt für Wald, Schnee und Landschaft WSL.
Between but not within-species Variation in the distribution of fitness effects
James, J., Kastally, C., Budde, K. B., González-Martínez, S. C., Milesi, P., Pyhäjärvi, T., … Westin, J. (2023). Between but not within-species Variation in the distribution of fitness effects. Molecular Biology and Evolution, 40(11), msad228 (16 pp.). https://doi.org/10.1093/molbev/msad228
Between-year variation in seed weights across altitudes in the high-alpine plant <i>Eritrichium nanum</i>
Wirth, L. R., Graf, R., Gugerli, F., Landergott, U., & Holderegger, R. (2010). Between-year variation in seed weights across altitudes in the high-alpine plant Eritrichium nanum. Plant Ecology, 207(2), 227-231. https://doi.org/10.1007/s11258-009-9667-3
 

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