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Taxon-specific fungal preference for distinct soil particle size fractions
Hemkemeyer, M., Christensen, B. T., Tebbe, C. C., & Hartmann, M. (2019). Taxon-specific fungal preference for distinct soil particle size fractions. European Journal of Soil Biology, 94, 103103 (9 pp.). https://doi.org/10.1016/j.ejsobi.2019.103103
Microbial succession on decomposing root litter in a drought-prone Scots pine forest
Herzog, C., Hartmann, M., Frey, B., Stierli, B., Rumpel, C., Buchmann, N., & Brunner, I. (2019). Microbial succession on decomposing root litter in a drought-prone Scots pine forest. ISME Journal, 13(9), 2346-2362. https://doi.org/10.1038/s41396-019-0436-6
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker
Bengtsson-Palme, J., Richardson, R. T., Meola, M., Wurzbacher, C., Tremblay, É. D., Thorell, K., … Nilsson, R. H. (2018). Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. Bioinformatics, 34(23), 4027-4033. https://doi.org/10.1093/bioinformatics/bty482
Positive diversity-functioning relationships in model communities of methanotrophic bacteria
Schnyder, E., Bodelier, P. L. E., Hartmann, M., Henneberger, R., & Niklaus, P. A. (2018). Positive diversity-functioning relationships in model communities of methanotrophic bacteria. Ecology, 99(3), 714-723. https://doi.org/10.1002/ecy.2138
Biochar affects community composition of nitrous oxide reducers in a field experiment
Krause, H. M., Hüppi, R., Leifeld, J., El-Hadidi, M., Harter, J., Kappler, A., … Gattinger, A. (2018). Biochar affects community composition of nitrous oxide reducers in a field experiment. Soil Biology and Biochemistry, 119, 143-151. https://doi.org/10.1016/j.soilbio.2018.01.018
Assessing effects of the entomopathogenic fungus <i>Metarhizium brunneum</i> on soil microbial communities in <i>Agriotes</i> spp. biological pest control
Mayerhofer, J., Eckard, S., Hartmann, M., Grabenweger, G., Widmer, F., Leuchtmann, A., & Enkerli, J. (2017). Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control. FEMS Microbiology Ecology, 93(10), fix117 (15 pp.). https://doi.org/10.1093/femsec/fix117
Improved recovery of ancient DNA from subfossil wood – application to the world's oldest Late Glacial pine forest
Lendvay, B., Hartmann, M., Brodbeck, S., Nievergelt, D., Reinig, F., Zoller, S., … Sperisen, C. (2018). Improved recovery of ancient DNA from subfossil wood – application to the world's oldest Late Glacial pine forest. New Phytologist, 217(4), 1737-1748. https://doi.org/10.1111/nph.14935
Der Boden – eine wertvolle Ressource für die genetische Vielfalt
Hartmann, M., & Sperisen, C. (2017). Der Boden – eine wertvolle Ressource für die genetische Vielfalt. In D. Csencsics & F. Gugerli (Eds.), WSL Berichte. Naturschutzgenetik (pp. 39-47). Birmensdorf: Eidg. Forschungsanstalt für Wald, Schnee und Landschaft WSL.
A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting
Wilhelm, R. C., Cardenas, E., Leung, H., Maas, K., Hartmann, M., Hahn, A., … Mohn, W. W. (2017). A metagenomic survey of forest soil microbial communities more than a decade after timber harvesting. Scientific Data, 4, 170092 (8 pp.). https://doi.org/10.1038/sdata.2017.92
Ecology of alpine macrofungi - combining historical with recent data
Brunner, I., Frey, B., Hartmann, M., Zimmermann, S., Graf, F., Suz, L. M., … Senn-Irlet, B. (2017). Ecology of alpine macrofungi - combining historical with recent data. Frontiers in Microbiology, 8, 2066 (13 pp.). https://doi.org/10.3389/fmicb.2017.02066
Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes
Degrune, F., Theodorakopoulos, N., Colinet, G., Hiel, M. P., Bodson, B., Taminiau, B., … Hartmann, M. (2017). Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes. Frontiers in Microbiology, 8, 1127 (15 pp.). https://doi.org/10.3389/fmicb.2017.01127
Effects of titanium dioxide nanoparticles on soil microbial communities and wheat biomass
Moll, J., Klingenfuss, F., Widmer, F., Gogos, A., Bucheli, T. D., Hartmann, M., & van der Heijden, M. G. A. (2017). Effects of titanium dioxide nanoparticles on soil microbial communities and wheat biomass. Soil Biology and Biochemistry, 111, 85-93. https://doi.org/10.1016/j.soilbio.2017.03.019
A decade of irrigation transforms the soil microbiome of a semi-arid pine forest
Hartmann, M., Brunner, I., Hagedorn, F., Bardgett, R. D., Stierli, B., Herzog, C., … Frey, B. (2017). A decade of irrigation transforms the soil microbiome of a semi-arid pine forest. Molecular Ecology, 26(4), 1190-1206. https://doi.org/10.1111/mec.13995
Tolerance of the forest soil microbiome to increasing mercury concentrations
Frossard, A., Hartmann, M., & Frey, B. (2017). Tolerance of the forest soil microbiome to increasing mercury concentrations. Soil Biology and Biochemistry, 105, 162-176. https://doi.org/10.1016/j.soilbio.2016.11.016
Metaxa, Overview
Bengtsson-Palme, J., Hartmann, M., Eriksson, K. M., & Nilsson, R. H. (2014). Metaxa, Overview. In K. E. Nelson (Ed.), Encyclopedia of Metagenomics (p. 5). https://doi.org/10.1007/978-1-4614-6418-1_239-6
Improving ITS sequence data for identification of plant pathogenic fungi
Nilsson, R. H., Hyde, K. D., Pawłowska, J., Ryberg, M., Tedersoo, L., Bjørnsgard Aas, A., … Abarenkov, K. (2014). Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Diversity, 67(1), 11-19. https://doi.org/10.1007/s13225-014-0291-8
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
Nilsson, R. H., Tedersoo, L., Abarenkov, K., Ryberg, M., Kristiansson, E., Hartmann, M., … Kóljalg, U. (2012). Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences. MycoKeys, 4, 37-63. https://doi.org/10.3897/mycokeys.4.3606
Grossflächige Untersuchungen der Bodenbiodiversität sind endlich realisierbar
Frey, B., Widmer, F., & Hartmann, M. (2015). Grossflächige Untersuchungen der Bodenbiodiversität sind endlich realisierbar. Hotspot, (32), 16-17.
Welche landwirtschaftlichen Anbausysteme fördern das Bodenleben?
Fliessbach, A., Mäder, P., Mayer, J., Oehl, F., Pfiffner, L., Hartmann, M., & Widmer, F. (2015). Welche landwirtschaftlichen Anbausysteme fördern das Bodenleben? Hotspot, (32), 8-9.
Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier
Rime, T., Hartmann, M., & Frey, B. (2016). Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier. ISME Journal, 10(7), 1625-1641. https://doi.org/10.1038/ismej.2015.238