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A new paradigm for petascale Monte Carlo simulation: replica exchange Wang-Landau sampling
Li, Y. W., Vogel, T., Wüst, T., & Landau, D. P. (2014). A new paradigm for petascale Monte Carlo simulation: replica exchange Wang-Landau sampling. Journal of physics: conference series: Vol. 510. (p. 012012 (11 pp.). Presented at the 25th IUPAP conference on computational physics (CCP2013). https://doi.org/10.1088/1742-6596/510/1/012012
Wang-Landau sampling of the interplay between surface adsorption and folding of HP lattice proteins
Li, Y. W., Wüst, T., & Landau, D. P. (2014). Wang-Landau sampling of the interplay between surface adsorption and folding of HP lattice proteins. Molecular Simulation, 40(7-9), 640-655. https://doi.org/10.1080/08927022.2013.847273
Exploring new frontiers in statistical physics with a new, parallel Wang-Landau framework
Vogel, T., Li, Y. W., Wüst, T., & Landau, D. P. (2014). Exploring new frontiers in statistical physics with a new, parallel Wang-Landau framework. Journal of physics: conference series: Vol. 487. (p. 012001 (10 pp.). Presented at the VII Brazilian meeting on simulational physics. https://doi.org/10.1088/1742-6596/487/1/012001
Generic folding and transition hierarchies for surface adsorption of hydrophobic-polar lattice model proteins
Li, Y. W., Wüst, T. W., & Landau, D. P. (2013). Generic folding and transition hierarchies for surface adsorption of hydrophobic-polar lattice model proteins. Physical Review E, 87(1), 012706 (11 pp.). https://doi.org/10.1103/PhysRevE.87.012706
Thermodynamics and structural properties of a confined HP protein determined by Wang-Landau simulation
Pattanasiri, B., Li, Y. W., Landau, D. P., Wüst, T., & Triampo, W. (2013). Thermodynamics and structural properties of a confined HP protein determined by Wang-Landau simulation. Journal of physics: conference series: Vol. 454. (p. 012071 (9 pp.). Presented at the 24th IUPAP conference on computational physics (IUPAP-CCP 2012). https://doi.org/10.1088/1742-6596/454/1/012071
Generic, hierarchical framework for massively parallel Wang-Landau sampling
Vogel, T., Li, Y. W., Wüst, T., & Landau, D. P. (2013). Generic, hierarchical framework for massively parallel Wang-Landau sampling. Physical Review Letters, 110(21), 210603 (5 pp.). https://doi.org/10.1103/PhysRevLett.110.210603
Surface adsorption of lattice HP proteins: thermodynamics and structural transitions using Wang-Landau sampling
Li, Y. W., Wüst, T., & Landau, D. P. (2012). Surface adsorption of lattice HP proteins: thermodynamics and structural transitions using Wang-Landau sampling. Journal of physics: conference series: Vol. 402. (p. 012046 (7 pp.). Presented at the IUPAP C20 conference on computational physics (CCP 2011). https://doi.org/10.1088/1742-6596/402/1/012046
Conformational transitions of a confined lattice protein: a Wang-Landau study
Pattanasiri, B., Li, Y. W., Landau, D. P., Wüst, T., & Triampo, W. (2012). Conformational transitions of a confined lattice protein: a Wang-Landau study. Journal of physics: conference series: Vol. 402. (p. 012048 (8 pp.). Presented at the IUPAP C20 conference on computational physics (CCP 2011). https://doi.org/10.1088/1742-6596/402/1/012048
Wang-Landau simulations of adsorbed and confined lattice proteins
Pattanasiri, B., Li, Y. W., Landau, D. P., & Wüst, T. (2012). Wang-Landau simulations of adsorbed and confined lattice proteins. International Journal of Modern Physics C, 23(8), 124008 (10 pp.). https://doi.org/10.1142/S0129183112400086
Optimized Wang-Landau sampling of lattice polymers: Ground state search and folding thermodynamics of HP model proteins
Wüst, T., & Landau, D. P. (2012). Optimized Wang-Landau sampling of lattice polymers: Ground state search and folding thermodynamics of HP model proteins. Journal of Chemical Physics, 137(6), 064903 (13 pp.). https://doi.org/10.1063/1.4742969
Monte Carlo simulations of the HP model (the "Ising model" of protein folding)
Li, Y. W., Wüst, T., & Landau, D. P. (2011). Monte Carlo simulations of the HP model (the "Ising model" of protein folding). Computer Physics Communications, 182(9), 1896-1899. https://doi.org/10.1016/j.cpc.2010.12.049
Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling
Wüst, T., Li, Y. W., & Landau, D. P. (2011). Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling. Journal of Statistical Physics, 144(3), 638-651. https://doi.org/10.1007/s10955-011-0266-z