| Fish communities can simultaneously contribute to nature and people across the world's tropical reefs
Flandrin, U., Mouillot, D., Albouy, C., Bejarano, S., Casajus, N., Cinner, J., … Mouquet, N. (2024). Fish communities can simultaneously contribute to nature and people across the world's tropical reefs. One Earth, 7(10), 1772-1785. https://doi.org/10.1016/j.oneear.2024.09.011 |
| Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands
Jaquier, M., Albouy, C., Bach, W., Waldock, C., Marques, V., Maire, E., … Pellissier, L. (2024). Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 14(5), e11337 (16 pp.). https://doi.org/10.1002/ece3.11337 |
| A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: an application to fish eDNA surveys
Lamperti, L., François, O., Mouillot, D., Mathon, L., Sanchez, T., Albouy, C., … Manel, S. (2024). A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: an application to fish eDNA surveys. Methods in Ecology and Evolution, 15(12), 2301-2315. https://doi.org/10.1111/2041-210X.14430 |
| Inferring the extinction risk of marine fish to inform global conservation priorities
Loiseau, N., Mouillot, D., Velez, L., Seguin, R., Casajus, N., Coux, C., … Mouquet, N. (2024). Inferring the extinction risk of marine fish to inform global conservation priorities. PLoS Biology, 22(8), e3002773 (19 pp.). https://doi.org/10.1371/journal.pbio.3002773 |
| Long-term changes in taxonomic and functional composition of European marine fish communities
Receveur, A., Leprieur, F., Ellingsen, K. E., Keith, D., Kleisner, K. M., McLean, M., … Auber, A. (2024). Long-term changes in taxonomic and functional composition of European marine fish communities. Ecography, 2024(9), e07234 (15 pp.). https://doi.org/10.1111/ecog.07234 |
| Seasonal dynamics of Mediterranean fish communities revealed by eDNA: contrasting compositions across depths and Marine Fully Protected Area boundaries
Rozanski, R., Velez, L., Hocdé, R., Duhamet, A., Waldock, C., Mouillot, D., … Albouy, C. (2024). Seasonal dynamics of Mediterranean fish communities revealed by eDNA: contrasting compositions across depths and Marine Fully Protected Area boundaries. Ecological Indicators, 166, 112290 (13 pp.). https://doi.org/10.1016/j.ecolind.2024.112290 |
| Bonifacio strait natural reserve (BSNR): investigating ecosystem functioning through comparative modelling of marine protected areas
Vanalderweireldt, L., Albouy, C., Le Loc'h, F., Libralato, S., Millot, R., Garcia, J., … Durieux, É. D. H. (2024). Bonifacio strait natural reserve (BSNR): investigating ecosystem functioning through comparative modelling of marine protected areas. Ocean and Coastal Management, 256, 107263 (14 pp.). https://doi.org/10.1016/j.ocecoaman.2024.107263 |
| Micronutrient levels of global tropical reef fish communities differ from fisheries capture
Waldock, C., Maire, E., Albouy, C., Andreoli, V., Beger, M., Claverie, T., … Pellissier, L. (2024). Micronutrient levels of global tropical reef fish communities differ from fisheries capture. People and Nature, 7(1), 32-51. https://doi.org/10.1002/pan3.10736 |
| Combining environmental DNA with remote sensing variables to map fish species distributions along a large river
Zong, S., Brantschen, J., Zhang, X., Albouy, C., Valentini, A., Zhang, H., … Pellissier, L. (2024). Combining environmental DNA with remote sensing variables to map fish species distributions along a large river. Remote Sensing in Ecology and Conservation, 10(2), 220-235. https://doi.org/10.1002/rse2.366 |
| Quantifying biodiversity using eDNA from water bodies: general principles and recommendations for sampling designs
Altermatt, F., Carraro, L., Antonetti, M., Albouy, C., Zhang, Y., Lyet, A., … Pellissier, L. (2023). Quantifying biodiversity using eDNA from water bodies: general principles and recommendations for sampling designs. Environmental DNA, 5(4), 671-682. https://doi.org/10.1002/edn3.430 |
| Phytodiversity is associated with habitat heterogeneity from Eurasia to the Hengduan Mountains
Chang, Y., Gelwick, K., Willett, S. D., Shen, X., Albouy, C., Luo, A., … Pellissier, L. (2023). Phytodiversity is associated with habitat heterogeneity from Eurasia to the Hengduan Mountains. New Phytologist, 240(4), 1647-1658. https://doi.org/10.1111/nph.19206 |
| The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding
Duhamet, A., Albouy, C., Marques, V., Manel, S., & Mouillot, D. (2023). The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding. Ecology and Evolution, 13, e9672 (15 pp.). https://doi.org/10.1002/ece3.9672 |
| Diversity across organisational scale emerges through dispersal ability and speciation dynamics in tropical fish
Keggin, T., Waldock, C., Skeels, A., Hagen, O., Albouy, C., Manel, S., & Pellissier, L. (2023). Diversity across organisational scale emerges through dispersal ability and speciation dynamics in tropical fish. BMC Biology, 21, 282 (16 pp.). https://doi.org/10.1186/s12915-023-01771-3 |
| New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data
Lamperti, L., Sanchez, T., Si Moussi, S., Mouillot, D., Albouy, C., Flück, B., … Manel, S. (2023). New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data. Molecular Ecology Resources, 23(8), 1946-1958. https://doi.org/10.1111/1755-0998.13861 |
| Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord
Marques, V., Hassler, C., Deiner, K., Meier, E., Valentini, A., Albouy, C., & Pellissier, L. (2023). Environmental drivers of eukaryotic plankton and fish biodiversity in an Arctic fjord. Polar Biology, 46, 1083-1096. https://doi.org/10.1007/s00300-023-03187-9 |
| Environmental DNA highlights fish biodiversity in mesophotic ecosystems
Muff, M., Jaquier, M., Marques, V., Ballesta, L., Deter, J., Bockel, T., … Pellissier, L. (2023). Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 5(1), 56-72. https://doi.org/10.1002/edn3.358 |
| Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations worldwide
Pimiento, C., Albouy, C., Silvestro, D., Mouton, T. L., Velez, L., Mouillot, D., … Leprieur, F. (2023). Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations worldwide. Nature Communications, 14(1), 7691 (13 pp.). https://doi.org/10.1038/s41467-023-43212-3 |
| DNA‐based networks reveal the ecological determinants of plant-herbivore interactions along environmental gradients
Pitteloud, C., Defossez, E., Albouy, C., Descombes, P., Rasmann, S., & Pellissier, L. (2023). DNA‐based networks reveal the ecological determinants of plant-herbivore interactions along environmental gradients. Molecular Ecology, 32(23), 6436-6448. https://doi.org/10.1111/mec.16545 |
| A multispecies, intraspecific functional traits data set on fish species from the Bay of Biscay, France
Rozanski, R., Eme, D., Boiron Leroy, A., Rufino, M. M., & Albouy, C. (2023). A multispecies, intraspecific functional traits data set on fish species from the Bay of Biscay, France. Ecology, 104, e3924 (2 pp.). https://doi.org/10.1002/ecy.3924 |
| Environmental DNA complements scientific trawling in surveys of marine fish biodiversity
Veron, P., Rozanski, R., Marques, V., Joost, S., Deschez, M. E., Trenkel, V. M., … Albouy, C. (2023). Environmental DNA complements scientific trawling in surveys of marine fish biodiversity. ICES Journal of Marine Science, 80(8), 2150-2165. https://doi.org/10.1093/icesjms/fsad139 |
