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From small forest samples to generalised uni and bimodal stand descriptions
Mey, R., Stadelmann, G., Thürig, E., Bugmann, H., & Zell, J. (2021). From small forest samples to generalised uni and bimodal stand descriptions. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13566
Assimilate, process and analyse thermal dissipation sap flow data using the TREX R package
Peters, R. L., Pappas, C., Hurley, A. G., Poyatos, R., Flo, V., Zweifel, R., … Steppe, K. (2021). Assimilate, process and analyse thermal dissipation sap flow data using the TREX R package. Methods in Ecology and Evolution (9 pp.). https://doi.org/10.1111/2041-210X.13524
Scaling methods in ecological modelling
Fritsch, M., Lischke, H., & Meyer, K. M. (2020). Scaling methods in ecological modelling. Methods in Ecology and Evolution, 11(11), 1368-1378. https://doi.org/10.1111/2041-210X.13466
The handbook for standardized field and laboratory measurements in terrestrial climate change experiments and observational studies (ClimEx)
Halbritter, A. H., De Boeck, H. J., Eycott, A. E., Reinsch, S., Robinson, D. A., … Vicca, S. (2020). The handbook for standardized field and laboratory measurements in terrestrial climate change experiments and observational studies (ClimEx). Methods in Ecology and Evolution, 11(1), 22-37. https://doi.org/10.1111/2041-210X.13331
How to evaluate community predictions without thresholding?
Scherrer, D., Mod, H. K., & Guisan, A. (2020). How to evaluate community predictions without thresholding? Methods in Ecology and Evolution, 11(1), 51-63. https://doi.org/10.1111/2041-210X.13312
r3PG – An R package for simulating forest growth using the 3-PG process-based model
Trotsiuk, V., Hartig, F., & Forrester, D. I. (2020). r3PG – An R package for simulating forest growth using the 3-PG process-based model. Methods in Ecology and Evolution, 11(11), 1470-1475. https://doi.org/10.1111/2041-210X.13474
Plant and root-zone water isotopes are difficult to measure, explain, and predict: some practical recommendations for determining plant water sources
von Freyberg, J., Allen, S. T., Grossiord, C., & Dawson, T. E. (2020). Plant and root-zone water isotopes are difficult to measure, explain, and predict: some practical recommendations for determining plant water sources. Methods in Ecology and Evolution, 11(11), 1352-1367. https://doi.org/10.1111/2041-210X.13461
Towards an ecological trait‐data standard
Schneider, F. D., Fichtmueller, D., Gossner, M. M., Güntsch, A., Jochum, M., König‐Ries, B., … Simons, N. K. (2019). Towards an ecological trait‐data standard. Methods in Ecology and Evolution, 10, 2006-2019. https://doi.org/10.1111/2041-210X.13288
Optimizing ensembles of small models for predicting the distribution of species with few occurrences
Breiner, F. T., Nobis, M. P., Bergamini, A., & Guisan, A. (2018). Optimizing ensembles of small models for predicting the distribution of species with few occurrences. Methods in Ecology and Evolution, 9(4), 802-808. https://doi.org/10.1111/2041-210X.12957
<i>TreeSimGM</i>: Simulating phylogenetic trees under general Bellman–Harris models with lineage-specific shifts of speciation and extinction in R
Hagen, O., & Stadler, T. (2018). TreeSimGM: Simulating phylogenetic trees under general Bellman–Harris models with lineage-specific shifts of speciation and extinction in R. Methods in Ecology and Evolution, 9(3), 754-760. https://doi.org/10.1111/2041-210X.12917
HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA
Schmid, S., Genevest, R., Gobet, E., Suchan, T., Sperisen, C., Tinner, W., & Alvarez, N. (2017). HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Methods in Ecology and Evolution, 8(10), 1374-1388. https://doi.org/10.1111/2041-210X.12785
How to predict plant functional types using imaging spectroscopy: linking vegetation community traits, plant functional types and spectral response
Schweiger, A. K., Schütz, M., Risch, A. C., Kneubühler, M., Haller, R., & Schaepman, M. E. (2017). How to predict plant functional types using imaging spectroscopy: linking vegetation community traits, plant functional types and spectral response. Methods in Ecology and Evolution, 8(1), 86-95. https://doi.org/10.1111/2041-210X.12642
Measuring the functional redundancy of biological communities: a quantitative guide
Ricotta, C., de Bello, F., Moretti, M., Caccianiga, M., Cerabolini, B. E. L., & Pavoine, S. (2016). Measuring the functional redundancy of biological communities: a quantitative guide. Methods in Ecology and Evolution, 7(11), 1386-1395. https://doi.org/10.1111/2041-210X.12604
Overcoming limitations of modelling rare species by using ensembles of small models
Breiner, F. T., Guisan, A., Bergamini, A., & Nobis, M. P. (2015). Overcoming limitations of modelling rare species by using ensembles of small models. Methods in Ecology and Evolution, 6(10), 1210-1218. https://doi.org/10.1111/2041-210X.12403
VirtualCom: a simulation model for eco-evolutionary community assembly and invasion
Münkemüller, T., & Gallien, L. (2015). VirtualCom: a simulation model for eco-evolutionary community assembly and invasion. Methods in Ecology and Evolution, 6(6), 735-743. https://doi.org/10.1111/2041-210X.12364
Identifying the signal of environmental filtering and competition in invasion patterns – a contest of approaches from community ecology
Gallien, L., Carboni, M., & Münkemüller, T. (2014). Identifying the signal of environmental filtering and competition in invasion patterns – a contest of approaches from community ecology. Methods in Ecology and Evolution, 5(10), 1002-1011. https://doi.org/10.1111/2041-210X.12257
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., … Nilsson, R. H. (2013). Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4(10), 914-919. https://doi.org/10.1111/2041-210X.12073