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Environmental DNA highlights fish biodiversity in mesophotic ecosystems
Muff, M., Jaquier, M., Marques, V., Ballesta, L., Deter, J., Bockel, T., … Pellissier, L. (2023). Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 5(1), 56-72. https://doi.org/10.1002/edn3.358
Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes
Reji Chacko, M., Altermatt, F., Fopp, F., Guisan, A., Keggin, T., Lyet, A., … Pellissier, L. (2023). Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes. Oecologia, 202, 699-713. https://doi.org/10.1007/s00442-023-05428-4
Using eDNA to understand predator-prey interactions influenced by invasive species
Riaz, M., Warren, D., Wittwer, C., Cocchiararo, B., Hundertmark, I., Reiners, T. E., … Nowak, C. (2023). Using eDNA to understand predator-prey interactions influenced by invasive species. Oecologia, 202, 757-767. https://doi.org/10.1007/s00442-023-05434-6
Evaluating bioinformatics pipelines for population-level inference using environmental DNA
Macé, B., Hocdé, R., Marques, V., Guerin, P. E., Valentini, A., Arnal, V., … Manel, S. (2022). Evaluating bioinformatics pipelines for population-level inference using environmental DNA. Environmental DNA, 4(3), 674-686. https://doi.org/10.1002/edn3.269
Ecological indices from environmental DNA to contrast coastal reefs under different anthropogenic pressures
Polanco F., A., Waldock, C., Keggin, T., Marques, V., Rozanski, R., Valentini, A., … Pellissier, L. (2022). Ecological indices from environmental DNA to contrast coastal reefs under different anthropogenic pressures. Ecology and Evolution, 12(8), e9212 (16 pp.). https://doi.org/10.1002/ece3.9212
Holistic impact evaluation of human activities on the coastal fish biodiversity in the Chinese coastal environment
Zhong, W., Zhang, J., Wang, Z., Lin, J., Huang, X., Liu, W., … Zhang, X. (2022). Holistic impact evaluation of human activities on the coastal fish biodiversity in the Chinese coastal environment. Environmental Science and Technology, 56, 6574-6583. https://doi.org/10.1021/acs.est.2c01339
Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems
Polanco F., A., Richards, E., Flück, B., Valentini, A., Altermatt, F., Brosse, S., … Pellissier, L. (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6), 1113-1127. https://doi.org/10.1002/edn3.232
Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA
Polanco F., A., Mutis Martinezguerra, M., Marques, V., Villa-Navarro, F., Borrero Pérez, G. H., Cheutin, M. C., … Pellissier, L. (2021). Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 53(6), 1606-1619. https://doi.org/10.1111/btp.13009
Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes
Polanco Fernández, A., Marques, V., Fopp, F., Juhel, J. B., Borrero-Pérez, G. H., Cheutin, M. C., … Pellissier, L. (2021). Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 3(1), 142-156. https://doi.org/10.1002/edn3.140
How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?
Stauffer, S., Jucker, M., Keggin, T., Marques, V., Andrello, M., Bessudo, S., … Waldock, C. (2021). How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs? Ecology and Evolution, 11(21), 14630-14643. https://doi.org/10.1002/ece3.8150
The treasure vault can be opened: large-scale genome skimming works well using herbarium and silica gel dried material
Alsos, I. G., Lavergne, S., Merkel, M. K. F., Boleda, M., Lammers, Y., Alberti, A., … Coissac, E. (2020). The treasure vault can be opened: large-scale genome skimming works well using herbarium and silica gel dried material. Plants, 9(4), 432 (18 pp.). https://doi.org/10.3390/plants9040432
Environmental and biotic drivers of soil microbial β-diversity across spatial and phylogenetic scales
Chalmandrier, L., Pansu, J., Zinger, L., Boyer, F., Coissac, E., Génin, A., … Thuiller, W. (2019). Environmental and biotic drivers of soil microbial β-diversity across spatial and phylogenetic scales. Ecography, 42(12), 2144-2156. https://doi.org/10.1111/ecog.04492
Biotic drivers of river and floodplain geomorphology - new molecular methods for assessing present-day and past biota
Larsen, A., Alvarez, N., Sperisen, C., & Lane, S. N. (2018). Biotic drivers of river and floodplain geomorphology - new molecular methods for assessing present-day and past biota. Earth Surface Processes and Landforms, 43(1), 333-338. https://doi.org/10.1002/esp.4238
Application de la génétique de la conservation dans les bureaux d’études en écologie
Bühler, C., & Dubey, S. (2017). Application de la génétique de la conservation dans les bureaux d’études en écologie. In D. Csencsics & F. Gugerli (Eds.), WSL Berichte. Naturschutzgenetik (pp. 77-82). Eidg. Forschungsanstalt für Wald, Schnee und Landschaft WSL.
A deep dig - hindsight on Holocene vegetation composition from ancient environmental DNA
Gugerli, F., Alvarez, N., & Tinner, W. (2013). A deep dig - hindsight on Holocene vegetation composition from ancient environmental DNA. Molecular Ecology, 22(13), 3433-3436. https://doi.org/10.1111/mec.12356